Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CU639417.3-201ENST00000624240 1404 ntBASIC17.81■□□□□ 0.44
SYNE3Q6ZMZ3 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 KRT8P35-201ENST00000483942 1338 ntBASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 AL035633.1-201ENST00000406139 838 ntBASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 BAATP1-201ENST00000412284 1225 ntBASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 AC007389.4-201ENST00000454674 793 ntBASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 RN7SL837P-201ENST00000463010 287 ntBASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 AC022137.2-201ENST00000503482 481 ntBASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 FGD5P1-202ENST00000614866 2498 ntBASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SYNE3Q6ZMZ3 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AJ011931.1-201ENST00000618749 2492 ntBASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AC134312.5-201ENST00000568031 1313 ntBASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 INE1-201ENST00000456273 945 ntBASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AL603764.1-201ENST00000636452 321 ntBASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE3Q6ZMZ3 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SYNE3Q6ZMZ3 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms