Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 AC018892.3-201ENST00000623986 2499 ntBASIC14.57□□□□□ -0.08
COL28A1Q2UY09 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 CYP51A1P3-201ENST00000400072 1428 ntBASIC14.57□□□□□ -0.08
COL28A1Q2UY09 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AC098935.1-201ENST00000446057 611 ntBASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AC234782.1-201ENST00000451950 919 ntBASIC14.56□□□□□ -0.08
COL28A1Q2UY09 KRT18P25-201ENST00000508931 1278 ntBASIC14.56□□□□□ -0.08
COL28A1Q2UY09 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AC005357.2-202ENST00000590507 1060 ntBASIC14.56□□□□□ -0.08
COL28A1Q2UY09 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AL450472.2-201ENST00000603663 1156 ntBASIC14.56□□□□□ -0.08
COL28A1Q2UY09 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 AL354989.2-201ENST00000435838 1540 ntBASIC14.56□□□□□ -0.08
COL28A1Q2UY09 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL28A1Q2UY09 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AL138709.1-201ENST00000614840 1693 ntBASIC14.55□□□□□ -0.08
COL28A1Q2UY09 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AC012618.1-201ENST00000461223 412 ntBASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 NPM1P43-201ENST00000558669 786 ntBASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms