Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.99□□□□□ -0.17
RNF4P78317 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.99□□□□□ -0.17
RNF4P78317 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
RNF4P78317 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.99□□□□□ -0.17
RNF4P78317 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
RNF4P78317 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
RNF4P78317 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RNF4P78317 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.98□□□□□ -0.17
RNF4P78317 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
RNF4P78317 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
RNF4P78317 AHCYP2-201ENST00000430630 1300 ntBASIC13.98□□□□□ -0.17
RNF4P78317 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
RNF4P78317 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RNF4P78317 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RNF4P78317 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.98□□□□□ -0.17
RNF4P78317 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.98□□□□□ -0.17
RNF4P78317 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.98□□□□□ -0.17
RNF4P78317 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.98□□□□□ -0.17
RNF4P78317 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 AC023310.1-201ENST00000554836 735 ntBASIC13.98□□□□□ -0.17
RNF4P78317 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.98□□□□□ -0.17
RNF4P78317 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.98□□□□□ -0.17
RNF4P78317 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.98□□□□□ -0.17
RNF4P78317 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
RNF4P78317 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 ACE3P-201ENST00000423435 1973 ntBASIC13.98□□□□□ -0.17
RNF4P78317 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
RNF4P78317 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.98□□□□□ -0.17
RNF4P78317 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
RNF4P78317 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RNF4P78317 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.98□□□□□ -0.17
RNF4P78317 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.97□□□□□ -0.17
RNF4P78317 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.97□□□□□ -0.17
RNF4P78317 CLUHP2-201ENST00000426660 1303 ntBASIC13.97□□□□□ -0.17
RNF4P78317 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
RNF4P78317 AL354989.2-201ENST00000435838 1540 ntBASIC13.97□□□□□ -0.17
RNF4P78317 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.97□□□□□ -0.17
RNF4P78317 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.97□□□□□ -0.17
RNF4P78317 MIR1202-201ENST00000408529 83 ntBASIC13.97□□□□□ -0.17
RNF4P78317 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.97□□□□□ -0.17
RNF4P78317 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.97□□□□□ -0.17
RNF4P78317 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.97□□□□□ -0.17
RNF4P78317 AC008687.7-202ENST00000637404 953 ntBASIC13.97□□□□□ -0.17
RNF4P78317 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms