Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CLK1P49759 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLK1P49759 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLK1P49759 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLK1P49759 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLK1P49759 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLK1P49759 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLK1P49759 AL023775.1-201ENST00000454907 1746 ntBASIC14.29□□□□□ -0.12
CLK1P49759 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 ZBED1P1-201ENST00000502364 1930 ntBASIC14.29□□□□□ -0.12
CLK1P49759 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
CLK1P49759 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.29□□□□□ -0.12
CLK1P49759 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLK1P49759 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLK1P49759 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.29□□□□□ -0.12
CLK1P49759 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.29□□□□□ -0.12
CLK1P49759 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.29□□□□□ -0.12
CLK1P49759 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.29□□□□□ -0.12
CLK1P49759 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.29□□□□□ -0.12
CLK1P49759 AC055876.3-201ENST00000431496 288 ntBASIC14.29□□□□□ -0.12
CLK1P49759 AC241585.1-201ENST00000433527 519 ntBASIC14.29□□□□□ -0.12
CLK1P49759 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.29□□□□□ -0.12
CLK1P49759 SDHAP3-202ENST00000515467 728 ntBASIC14.29□□□□□ -0.12
CLK1P49759 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.29□□□□□ -0.12
CLK1P49759 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.29□□□□□ -0.12
CLK1P49759 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.29□□□□□ -0.12
CLK1P49759 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.29□□□□□ -0.12
CLK1P49759 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.29□□□□□ -0.12
CLK1P49759 AC138649.4-201ENST00000612222 287 ntBASIC14.29□□□□□ -0.12
CLK1P49759 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.29□□□□□ -0.12
CLK1P49759 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLK1P49759 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 Z97205.2-201ENST00000564697 1639 ntBASIC14.29□□□□□ -0.12
CLK1P49759 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.29□□□□□ -0.12
CLK1P49759 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLK1P49759 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.28□□□□□ -0.12
CLK1P49759 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
CLK1P49759 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CLK1P49759 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.28□□□□□ -0.12
CLK1P49759 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.28□□□□□ -0.12
CLK1P49759 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 TREML5P-201ENST00000421694 576 ntBASIC14.28□□□□□ -0.12
CLK1P49759 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.28□□□□□ -0.12
CLK1P49759 AC092580.3-201ENST00000430932 139 ntBASIC14.28□□□□□ -0.12
CLK1P49759 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.28□□□□□ -0.12
CLK1P49759 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.28□□□□□ -0.12
CLK1P49759 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.28□□□□□ -0.12
CLK1P49759 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.28□□□□□ -0.12
CLK1P49759 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
CLK1P49759 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLK1P49759 AL590560.3-201ENST00000623350 461 ntBASIC14.28□□□□□ -0.12
CLK1P49759 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.28□□□□□ -0.12
CLK1P49759 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.28□□□□□ -0.12
CLK1P49759 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
CLK1P49759 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLK1P49759 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.28□□□□□ -0.12
CLK1P49759 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.28□□□□□ -0.12
CLK1P49759 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
CLK1P49759 AC027601.5-201ENST00000624065 2482 ntBASIC14.27□□□□□ -0.12
CLK1P49759 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
CLK1P49759 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CLK1P49759 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms