Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
CDX1P47902 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC12.44□□□□□ -0.42
CDX1P47902 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC12.44□□□□□ -0.42
CDX1P47902 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.44□□□□□ -0.42
CDX1P47902 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.44□□□□□ -0.42
CDX1P47902 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.44□□□□□ -0.42
CDX1P47902 COX20P2-201ENST00000452636 358 ntBASIC12.44□□□□□ -0.42
CDX1P47902 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.44□□□□□ -0.42
CDX1P47902 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.44□□□□□ -0.42
CDX1P47902 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.44□□□□□ -0.42
CDX1P47902 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.44□□□□□ -0.42
CDX1P47902 AL512361.1-201ENST00000554200 418 ntBASIC12.44□□□□□ -0.42
CDX1P47902 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.44□□□□□ -0.42
CDX1P47902 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC12.44□□□□□ -0.42
CDX1P47902 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.44□□□□□ -0.42
CDX1P47902 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.44□□□□□ -0.42
CDX1P47902 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CDX1P47902 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.43□□□□□ -0.42
CDX1P47902 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC12.43□□□□□ -0.42
CDX1P47902 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
CDX1P47902 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 AP001282.1-201ENST00000531301 1499 ntBASIC12.43□□□□□ -0.42
CDX1P47902 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 MIR661-201ENST00000384842 89 ntBASIC12.43□□□□□ -0.42
CDX1P47902 HAUS4P1-201ENST00000406739 1145 ntBASIC12.43□□□□□ -0.42
CDX1P47902 PIN1P1-201ENST00000412108 996 ntBASIC12.43□□□□□ -0.42
CDX1P47902 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
CDX1P47902 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.43□□□□□ -0.42
CDX1P47902 SERBP1P5-201ENST00000510079 1181 ntBASIC12.43□□□□□ -0.42
CDX1P47902 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.43□□□□□ -0.42
CDX1P47902 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
CDX1P47902 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
CDX1P47902 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 AC004233.3-201ENST00000607794 1269 ntBASIC12.43□□□□□ -0.42
CDX1P47902 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
CDX1P47902 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CDX1P47902 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms