Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 AC078875.1-201ENST00000431907 724 ntBASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 RBM8B-201ENST00000555532 525 ntBASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 E2F3P2-201ENST00000447755 1422 ntBASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
SHROOM4Q9ULL8 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 RN7SL596P-201ENST00000582123 288 ntBASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 AC105137.3-201ENST00000617588 984 ntBASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM4Q9ULL8 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC28.28■■■□□ 2.12
SHROOM4Q9ULL8 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 CDC23-208ENST00000505120 455 ntTSL 3 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 AC239868.1-201ENST00000369385 493 ntBASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 PSMD4P1-201ENST00000433951 1109 ntBASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM4Q9ULL8 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms