Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 COX5BP1-201ENST00000507622 393 ntBASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TM9SF3Q9HD45 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AC005077.2-201ENST00000449786 690 ntBASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 AC244157.2-201ENST00000616239 1006 ntBASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TM9SF3Q9HD45 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms