Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC005865.2-202ENST00000635814 725 ntBASIC12.86□□□□□ -0.35
COL12A1Q99715 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC12.86□□□□□ -0.35
COL12A1Q99715 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 AC012508.2-201ENST00000567613 1472 ntBASIC12.86□□□□□ -0.35
COL12A1Q99715 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL12A1Q99715 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC12.85□□□□□ -0.35
COL12A1Q99715 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL12A1Q99715 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.85□□□□□ -0.35
COL12A1Q99715 AL451000.1-201ENST00000451300 1186 ntBASIC12.85□□□□□ -0.35
COL12A1Q99715 AC068831.5-201ENST00000557387 328 ntBASIC12.85□□□□□ -0.35
COL12A1Q99715 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC12.85□□□□□ -0.35
COL12A1Q99715 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC12.85□□□□□ -0.35
COL12A1Q99715 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.85□□□□□ -0.35
COL12A1Q99715 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC12.85□□□□□ -0.35
COL12A1Q99715 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL12A1Q99715 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 AC098657.1-201ENST00000416270 1135 ntBASIC12.85□□□□□ -0.35
COL12A1Q99715 CD164-210ENST00000512821 964 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 AL160191.2-201ENST00000603975 601 ntBASIC12.85□□□□□ -0.35
COL12A1Q99715 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
COL12A1Q99715 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.85□□□□□ -0.35
COL12A1Q99715 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 RNA5SP359-201ENST00000364838 113 ntBASIC12.85□□□□□ -0.35
COL12A1Q99715 AL512599.1-201ENST00000430724 685 ntBASIC12.85□□□□□ -0.35
COL12A1Q99715 AL157407.1-201ENST00000435784 904 ntBASIC12.85□□□□□ -0.35
COL12A1Q99715 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC12.85□□□□□ -0.35
COL12A1Q99715 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC12.85□□□□□ -0.35
COL12A1Q99715 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC12.85□□□□□ -0.35
COL12A1Q99715 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC12.85□□□□□ -0.35
COL12A1Q99715 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL12A1Q99715 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC12.84□□□□□ -0.35
COL12A1Q99715 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL12A1Q99715 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
COL12A1Q99715 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
COL12A1Q99715 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC12.84□□□□□ -0.35
COL12A1Q99715 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
COL12A1Q99715 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC12.84□□□□□ -0.35
COL12A1Q99715 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC12.84□□□□□ -0.35
COL12A1Q99715 AC092570.1-201ENST00000414446 469 ntBASIC12.84□□□□□ -0.35
COL12A1Q99715 KRT8P30-201ENST00000432100 650 ntBASIC12.84□□□□□ -0.35
COL12A1Q99715 AC027612.2-202ENST00000445955 1199 ntBASIC12.84□□□□□ -0.35
COL12A1Q99715 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC12.84□□□□□ -0.35
COL12A1Q99715 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms