Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC17.68■□□□□ 0.42
NUP88Q99567 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
NUP88Q99567 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP88Q99567 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.68■□□□□ 0.42
NUP88Q99567 AC005695.3-201ENST00000614522 232 ntBASIC17.68■□□□□ 0.42
NUP88Q99567 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
NUP88Q99567 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
NUP88Q99567 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP88Q99567 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP88Q99567 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
NUP88Q99567 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.67■□□□□ 0.42
NUP88Q99567 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.67■□□□□ 0.42
NUP88Q99567 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
NUP88Q99567 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.67■□□□□ 0.42
NUP88Q99567 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP88Q99567 REXO1L4P-201ENST00000605109 1937 ntBASIC17.67■□□□□ 0.42
NUP88Q99567 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
NUP88Q99567 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP88Q99567 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
NUP88Q99567 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP88Q99567 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP88Q99567 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.67■□□□□ 0.42
NUP88Q99567 AC104306.2-201ENST00000451877 341 ntBASIC17.67■□□□□ 0.42
NUP88Q99567 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP88Q99567 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
NUP88Q99567 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.67■□□□□ 0.42
NUP88Q99567 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.67■□□□□ 0.42
NUP88Q99567 OR10B1P-201ENST00000601666 907 ntBASIC17.67■□□□□ 0.42
NUP88Q99567 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
NUP88Q99567 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.67■□□□□ 0.42
NUP88Q99567 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC17.67■□□□□ 0.42
NUP88Q99567 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP88Q99567 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP88Q99567 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.67■□□□□ 0.42
NUP88Q99567 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
NUP88Q99567 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP88Q99567 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
NUP88Q99567 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
NUP88Q99567 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
NUP88Q99567 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP88Q99567 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.66■□□□□ 0.42
NUP88Q99567 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.66■□□□□ 0.42
NUP88Q99567 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP88Q99567 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP88Q99567 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP88Q99567 FAM8A4P-201ENST00000435433 1213 ntBASIC17.66■□□□□ 0.42
NUP88Q99567 MTX1P1-201ENST00000440904 838 ntBASIC17.66■□□□□ 0.42
NUP88Q99567 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.66■□□□□ 0.42
NUP88Q99567 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 AC026434.2-201ENST00000506094 1078 ntBASIC17.66■□□□□ 0.42
NUP88Q99567 AL391280.1-201ENST00000506969 1062 ntBASIC17.66■□□□□ 0.42
NUP88Q99567 MIR3615-201ENST00000581999 87 ntBASIC17.66■□□□□ 0.42
NUP88Q99567 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.66■□□□□ 0.42
NUP88Q99567 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.66■□□□□ 0.42
NUP88Q99567 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 TMBIM7P-203ENST00000641617 1718 ntBASIC17.66■□□□□ 0.42
NUP88Q99567 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 AL360270.3-201ENST00000609118 1348 ntBASIC17.66■□□□□ 0.42
NUP88Q99567 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.66■□□□□ 0.42
NUP88Q99567 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
NUP88Q99567 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP88Q99567 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
NUP88Q99567 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
NUP88Q99567 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 LINC02228-204ENST00000642115 2962 ntBASIC17.65■□□□□ 0.42
NUP88Q99567 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP88Q99567 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
NUP88Q99567 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC17.65■□□□□ 0.42
NUP88Q99567 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms