Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
PCDH1Q08174 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.59□□□□□ -0.07
PCDH1Q08174 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDH1Q08174 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDH1Q08174 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDH1Q08174 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDH1Q08174 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDH1Q08174 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDH1Q08174 AC022137.2-201ENST00000503482 481 ntBASIC14.59□□□□□ -0.07
PCDH1Q08174 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDH1Q08174 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.59□□□□□ -0.07
PCDH1Q08174 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDH1Q08174 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDH1Q08174 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDH1Q08174 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDH1Q08174 CTBP2P3-201ENST00000585629 1255 ntBASIC14.59□□□□□ -0.07
PCDH1Q08174 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.59□□□□□ -0.07
PCDH1Q08174 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDH1Q08174 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDH1Q08174 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
PCDH1Q08174 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.59□□□□□ -0.07
PCDH1Q08174 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.59□□□□□ -0.07
PCDH1Q08174 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDH1Q08174 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.58□□□□□ -0.07
PCDH1Q08174 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.58□□□□□ -0.07
PCDH1Q08174 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.58□□□□□ -0.07
PCDH1Q08174 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
PCDH1Q08174 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PCDH1Q08174 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
PCDH1Q08174 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
PCDH1Q08174 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.07
PCDH1Q08174 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PCDH1Q08174 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PCDH1Q08174 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
PCDH1Q08174 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.58□□□□□ -0.07
PCDH1Q08174 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
PCDH1Q08174 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.58□□□□□ -0.08
PCDH1Q08174 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDH1Q08174 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
PCDH1Q08174 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 AC236430.1-201ENST00000402231 743 ntBASIC14.58□□□□□ -0.08
PCDH1Q08174 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.58□□□□□ -0.08
PCDH1Q08174 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.58□□□□□ -0.08
PCDH1Q08174 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 EIF3FP3-201ENST00000434851 1086 ntBASIC14.58□□□□□ -0.08
PCDH1Q08174 AL162726.2-201ENST00000438986 1017 ntBASIC14.58□□□□□ -0.08
PCDH1Q08174 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
PCDH1Q08174 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 AP001582.1-201ENST00000525856 295 ntBASIC14.58□□□□□ -0.08
PCDH1Q08174 AC140912.1-201ENST00000577171 1054 ntBASIC14.58□□□□□ -0.08
PCDH1Q08174 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
PCDH1Q08174 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.58□□□□□ -0.08
PCDH1Q08174 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDH1Q08174 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.58□□□□□ -0.08
PCDH1Q08174 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
PCDH1Q08174 AC106881.1-201ENST00000605849 3329 ntBASIC14.58□□□□□ -0.08
PCDH1Q08174 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.58□□□□□ -0.08
PCDH1Q08174 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDH1Q08174 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
PCDH1Q08174 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.58□□□□□ -0.08
PCDH1Q08174 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
PCDH1Q08174 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDH1Q08174 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
PCDH1Q08174 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDH1Q08174 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDH1Q08174 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDH1Q08174 AC018529.2-202ENST00000611482 3087 ntBASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms