Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
MSH6P52701 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.47■□□□□ 0.87
MSH6P52701 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC20.47■□□□□ 0.87
MSH6P52701 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
MSH6P52701 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
MSH6P52701 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 OR2R1P-201ENST00000441404 914 ntBASIC20.47■□□□□ 0.87
MSH6P52701 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH6P52701 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH6P52701 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC20.47■□□□□ 0.87
MSH6P52701 AC006548.2-201ENST00000605217 529 ntBASIC20.47■□□□□ 0.87
MSH6P52701 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC20.47■□□□□ 0.87
MSH6P52701 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
MSH6P52701 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
MSH6P52701 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 OR6D1P-202ENST00000641007 5290 ntBASIC20.47■□□□□ 0.87
MSH6P52701 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
MSH6P52701 AC026691.1-201ENST00000602502 2017 ntBASIC20.47■□□□□ 0.87
MSH6P52701 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MSH6P52701 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
MSH6P52701 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH6P52701 AC024909.3-201ENST00000611513 2257 ntBASIC20.47■□□□□ 0.87
MSH6P52701 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH6P52701 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC20.46■□□□□ 0.87
MSH6P52701 MIR2392-201ENST00000584881 84 ntBASIC20.46■□□□□ 0.87
MSH6P52701 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC20.46■□□□□ 0.87
MSH6P52701 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MSH6P52701 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MSH6P52701 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MSH6P52701 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MSH6P52701 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MSH6P52701 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MSH6P52701 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MSH6P52701 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC20.46■□□□□ 0.87
MSH6P52701 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
MSH6P52701 AL603832.2-201ENST00000566195 2125 ntBASIC20.46■□□□□ 0.87
MSH6P52701 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH6P52701 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
MSH6P52701 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
MSH6P52701 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH6P52701 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH6P52701 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
MSH6P52701 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
MSH6P52701 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC20.46■□□□□ 0.87
MSH6P52701 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH6P52701 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.46■□□□□ 0.87
MSH6P52701 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 LINC02199-201ENST00000506655 2702 ntBASIC20.46■□□□□ 0.87
MSH6P52701 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
MSH6P52701 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MSH6P52701 UROS-201ENST00000368774 744 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH6P52701 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
MSH6P52701 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC20.46■□□□□ 0.87
MSH6P52701 ERP29P1-201ENST00000442902 706 ntBASIC20.46■□□□□ 0.87
MSH6P52701 RN7SL494P-201ENST00000461517 304 ntBASIC20.46■□□□□ 0.87
MSH6P52701 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC20.46■□□□□ 0.87
MSH6P52701 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
MSH6P52701 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC20.46■□□□□ 0.87
MSH6P52701 AL627230.2-201ENST00000613254 655 ntBASIC20.46■□□□□ 0.87
MSH6P52701 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 AC004554.1-201ENST00000422830 1468 ntBASIC20.46■□□□□ 0.87
MSH6P52701 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH6P52701 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
MSH6P52701 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC20.45■□□□□ 0.86
MSH6P52701 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
MSH6P52701 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
MSH6P52701 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms