Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN9P43378 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 CLUHP2-201ENST00000426660 1303 ntBASIC15.67■□□□□ 0.1
PTPN9P43378 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PTPN9P43378 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN9P43378 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN9P43378 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN9P43378 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN9P43378 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.66■□□□□ 0.1
PTPN9P43378 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.66■□□□□ 0.1
PTPN9P43378 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.66■□□□□ 0.1
PTPN9P43378 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN9P43378 AC138466.3-201ENST00000619983 221 ntBASIC15.66■□□□□ 0.1
PTPN9P43378 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN9P43378 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN9P43378 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN9P43378 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 SALL4P5-201ENST00000419001 1760 ntBASIC15.66■□□□□ 0.1
PTPN9P43378 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
PTPN9P43378 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 LINC00552-201ENST00000625151 2579 ntBASIC15.66■□□□□ 0.1
PTPN9P43378 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN9P43378 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PTPN9P43378 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN9P43378 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.65■□□□□ 0.1
PTPN9P43378 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 AC140479.7-201ENST00000636301 2332 ntBASIC15.65■□□□□ 0.1
PTPN9P43378 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.65■□□□□ 0.1
PTPN9P43378 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 RN7SKP230-201ENST00000365642 335 ntBASIC15.65■□□□□ 0.1
PTPN9P43378 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 KRT17P7-201ENST00000451704 1104 ntBASIC15.65■□□□□ 0.1
PTPN9P43378 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PTPN9P43378 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.65■□□□□ 0.1
PTPN9P43378 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.65■□□□□ 0.1
PTPN9P43378 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.65■□□□□ 0.1
PTPN9P43378 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.65■□□□□ 0.1
PTPN9P43378 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.65■□□□□ 0.1
PTPN9P43378 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 AC138696.2-201ENST00000607376 223 ntBASIC15.65■□□□□ 0.1
PTPN9P43378 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 C8orf49-201ENST00000525043 1968 ntBASIC15.65■□□□□ 0.1
PTPN9P43378 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
PTPN9P43378 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN9P43378 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
PTPN9P43378 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms