Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.84□□□□□ -0.03
SHMT2P34897 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.84□□□□□ -0.03
SHMT2P34897 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SHMT2P34897 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 AC041040.2-201ENST00000622926 2899 ntBASIC14.84□□□□□ -0.03
SHMT2P34897 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
SHMT2P34897 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.84□□□□□ -0.03
SHMT2P34897 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.84□□□□□ -0.03
SHMT2P34897 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHMT2P34897 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 AC012508.2-201ENST00000567613 1472 ntBASIC14.83□□□□□ -0.03
SHMT2P34897 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHMT2P34897 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.83□□□□□ -0.04
SHMT2P34897 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.83□□□□□ -0.04
SHMT2P34897 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
SHMT2P34897 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.83□□□□□ -0.04
SHMT2P34897 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 RNU1-114P-201ENST00000365297 166 ntBASIC14.83□□□□□ -0.04
SHMT2P34897 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.83□□□□□ -0.04
SHMT2P34897 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 AL139094.1-201ENST00000405549 1188 ntBASIC14.83□□□□□ -0.04
SHMT2P34897 KLF2P2-201ENST00000416807 1039 ntBASIC14.83□□□□□ -0.04
SHMT2P34897 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.83□□□□□ -0.04
SHMT2P34897 GPR53P-205ENST00000457298 1084 ntBASIC14.83□□□□□ -0.04
SHMT2P34897 AP001889.1-201ENST00000525414 633 ntBASIC14.83□□□□□ -0.04
SHMT2P34897 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.83□□□□□ -0.04
SHMT2P34897 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.83□□□□□ -0.04
SHMT2P34897 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.83□□□□□ -0.04
SHMT2P34897 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.83□□□□□ -0.04
SHMT2P34897 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.83□□□□□ -0.04
SHMT2P34897 AC018665.1-201ENST00000622927 1362 ntBASIC14.83□□□□□ -0.04
SHMT2P34897 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SHMT2P34897 FGD5P1-202ENST00000614866 2498 ntBASIC14.83□□□□□ -0.04
SHMT2P34897 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHMT2P34897 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
SHMT2P34897 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms