Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC11.76□□□□□ -0.53
CXCL1P09341 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC11.76□□□□□ -0.53
CXCL1P09341 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
CXCL1P09341 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC11.76□□□□□ -0.53
CXCL1P09341 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CXCL1P09341 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
CXCL1P09341 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC11.76□□□□□ -0.53
CXCL1P09341 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 RMI2-205ENST00000576027 818 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 AL009183.1-201ENST00000603760 355 ntBASIC11.76□□□□□ -0.53
CXCL1P09341 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CXCL1P09341 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
CXCL1P09341 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
CXCL1P09341 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CXCL1P09341 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC11.76□□□□□ -0.53
CXCL1P09341 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC11.75□□□□□ -0.53
CXCL1P09341 AC073439.1-201ENST00000624121 1774 ntBASIC11.75□□□□□ -0.53
CXCL1P09341 GOLGA2P5-201ENST00000266746 2395 ntBASIC11.75□□□□□ -0.53
CXCL1P09341 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 AC090505.1-201ENST00000430515 1834 ntBASIC11.75□□□□□ -0.53
CXCL1P09341 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 AKR1C7P-201ENST00000305623 895 ntBASIC11.75□□□□□ -0.53
CXCL1P09341 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 RPS2P1-201ENST00000434010 821 ntBASIC11.75□□□□□ -0.53
CXCL1P09341 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 AL513480.1-201ENST00000451731 511 ntBASIC11.75□□□□□ -0.53
CXCL1P09341 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC11.75□□□□□ -0.53
CXCL1P09341 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC11.75□□□□□ -0.53
CXCL1P09341 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC11.75□□□□□ -0.53
CXCL1P09341 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC11.75□□□□□ -0.53
CXCL1P09341 RPL28-209ENST00000560055 670 ntTSL 3 BASIC11.75□□□□□ -0.53
CXCL1P09341 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC11.75□□□□□ -0.53
CXCL1P09341 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC11.75□□□□□ -0.53
CXCL1P09341 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC11.75□□□□□ -0.53
CXCL1P09341 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 AC004790.2-201ENST00000623588 572 ntBASIC11.75□□□□□ -0.53
CXCL1P09341 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms