Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HOXA3O43365 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA3O43365 NDUFAB1P1-201ENST00000404262 460 ntBASIC12.19□□□□□ -0.46
HOXA3O43365 LSM5-207ENST00000410044 687 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA3O43365 CALR4P-201ENST00000431943 946 ntBASIC12.19□□□□□ -0.46
HOXA3O43365 EIF3FP3-201ENST00000434851 1086 ntBASIC12.19□□□□□ -0.46
HOXA3O43365 AC004898.1-201ENST00000451057 766 ntBASIC12.19□□□□□ -0.46
HOXA3O43365 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
HOXA3O43365 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
HOXA3O43365 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC12.19□□□□□ -0.46
HOXA3O43365 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
HOXA3O43365 AL645728.2-202ENST00000641679 227 ntBASIC12.19□□□□□ -0.46
HOXA3O43365 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.19□□□□□ -0.46
HOXA3O43365 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.19□□□□□ -0.46
HOXA3O43365 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.19□□□□□ -0.46
HOXA3O43365 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA3O43365 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA3O43365 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA3O43365 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HOXA3O43365 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.18□□□□□ -0.46
HOXA3O43365 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
HOXA3O43365 HNRNPA1P32-201ENST00000396326 963 ntBASIC12.18□□□□□ -0.46
HOXA3O43365 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 TISP43-201ENST00000409793 538 ntTSL 4 BASIC12.18□□□□□ -0.46
HOXA3O43365 AC079178.1-201ENST00000420915 656 ntBASIC12.18□□□□□ -0.46
HOXA3O43365 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXA3O43365 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.18□□□□□ -0.46
HOXA3O43365 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 APOA2-204ENST00000464492 530 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXA3O43365 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXA3O43365 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 PPY2P-201ENST00000582808 702 ntBASIC12.18□□□□□ -0.46
HOXA3O43365 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC12.18□□□□□ -0.46
HOXA3O43365 AC020914.3-201ENST00000594712 304 ntBASIC12.18□□□□□ -0.46
HOXA3O43365 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HOXA3O43365 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HOXA3O43365 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXA3O43365 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA3O43365 AC055811.4-201ENST00000624039 1754 ntBASIC12.18□□□□□ -0.46
HOXA3O43365 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
HOXA3O43365 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA3O43365 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC12.17□□□□□ -0.46
HOXA3O43365 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA3O43365 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA3O43365 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms