Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC42Q9Y546 AC110285.7-201ENST00000624417 1536 ntBASIC21.75■■□□□ 1.07
LRRC42Q9Y546 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.75■■□□□ 1.07
LRRC42Q9Y546 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LRRC42Q9Y546 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
LRRC42Q9Y546 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC42Q9Y546 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC42Q9Y546 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.73■■□□□ 1.07
LRRC42Q9Y546 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC42Q9Y546 RNF165-205ENST00000588679 2904 ntBASIC21.73■■□□□ 1.07
LRRC42Q9Y546 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC42Q9Y546 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
LRRC42Q9Y546 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
LRRC42Q9Y546 HLA-L-211ENST00000482052 1765 ntBASIC21.72■■□□□ 1.07
LRRC42Q9Y546 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
LRRC42Q9Y546 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC42Q9Y546 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC42Q9Y546 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
LRRC42Q9Y546 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC42Q9Y546 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC42Q9Y546 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
LRRC42Q9Y546 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
LRRC42Q9Y546 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC42Q9Y546 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
LRRC42Q9Y546 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC42Q9Y546 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC42Q9Y546 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC42Q9Y546 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC42Q9Y546 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
LRRC42Q9Y546 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
LRRC42Q9Y546 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC42Q9Y546 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
LRRC42Q9Y546 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC42Q9Y546 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
LRRC42Q9Y546 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC42Q9Y546 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC42Q9Y546 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
LRRC42Q9Y546 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.69■■□□□ 1.06
LRRC42Q9Y546 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.69■■□□□ 1.06
LRRC42Q9Y546 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LRRC42Q9Y546 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC42Q9Y546 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LRRC42Q9Y546 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
LRRC42Q9Y546 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC42Q9Y546 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC42Q9Y546 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC42Q9Y546 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC42Q9Y546 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
LRRC42Q9Y546 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC42Q9Y546 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC42Q9Y546 AC097358.2-201ENST00000607541 1159 ntBASIC21.67■■□□□ 1.06
LRRC42Q9Y546 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
LRRC42Q9Y546 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC42Q9Y546 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC42Q9Y546 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.66■■□□□ 1.06
LRRC42Q9Y546 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC42Q9Y546 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC42Q9Y546 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.06
LRRC42Q9Y546 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
LRRC42Q9Y546 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LRRC42Q9Y546 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms