Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USE1Q9NZ43 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.31■■□□□ 1
USE1Q9NZ43 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
USE1Q9NZ43 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
USE1Q9NZ43 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.31■■□□□ 1
USE1Q9NZ43 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
USE1Q9NZ43 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
USE1Q9NZ43 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.31■■□□□ 1
USE1Q9NZ43 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.3■■□□□ 1
USE1Q9NZ43 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
USE1Q9NZ43 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.3■■□□□ 1
USE1Q9NZ43 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.3■■□□□ 1
USE1Q9NZ43 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.29■■□□□ 1
USE1Q9NZ43 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.29■■□□□ 1
USE1Q9NZ43 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
USE1Q9NZ43 AC092068.2-201ENST00000590491 1708 ntBASIC21.29■■□□□ 1
USE1Q9NZ43 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.29■■□□□ 1
USE1Q9NZ43 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
USE1Q9NZ43 LINC00526-201ENST00000581067 1875 ntBASIC21.29■■□□□ 1
USE1Q9NZ43 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.29■■□□□ 1
USE1Q9NZ43 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.28■■□□□ 1
USE1Q9NZ43 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USE1Q9NZ43 AC127496.7-201ENST00000625110 1798 ntBASIC21.28■■□□□ 1
USE1Q9NZ43 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
USE1Q9NZ43 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.27■■□□□ 1
USE1Q9NZ43 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.27■■□□□ 1
USE1Q9NZ43 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USE1Q9NZ43 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
USE1Q9NZ43 AC025884.2-201ENST00000553429 711 ntBASIC21.27■■□□□ 1
USE1Q9NZ43 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.27■■□□□ 1
USE1Q9NZ43 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
USE1Q9NZ43 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USE1Q9NZ43 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.27■■□□□ 1
USE1Q9NZ43 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
USE1Q9NZ43 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.27■■□□□ 1
USE1Q9NZ43 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.27■■□□□ 1
USE1Q9NZ43 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
USE1Q9NZ43 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.27■□□□□ 0.99
USE1Q9NZ43 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
USE1Q9NZ43 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.27■□□□□ 0.99
USE1Q9NZ43 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
USE1Q9NZ43 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USE1Q9NZ43 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USE1Q9NZ43 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USE1Q9NZ43 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USE1Q9NZ43 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USE1Q9NZ43 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.26■□□□□ 0.99
USE1Q9NZ43 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
USE1Q9NZ43 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USE1Q9NZ43 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
USE1Q9NZ43 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
USE1Q9NZ43 PKD1P6-201ENST00000343738 4769 ntBASIC21.26■□□□□ 0.99
USE1Q9NZ43 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USE1Q9NZ43 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
USE1Q9NZ43 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USE1Q9NZ43 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USE1Q9NZ43 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
USE1Q9NZ43 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
USE1Q9NZ43 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USE1Q9NZ43 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USE1Q9NZ43 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
USE1Q9NZ43 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USE1Q9NZ43 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USE1Q9NZ43 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USE1Q9NZ43 C1orf229-201ENST00000623686 2258 ntBASIC21.25■□□□□ 0.99
USE1Q9NZ43 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USE1Q9NZ43 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USE1Q9NZ43 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USE1Q9NZ43 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USE1Q9NZ43 MIR3960-201ENST00000583311 91 ntBASIC21.24■□□□□ 0.99
USE1Q9NZ43 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.24■□□□□ 0.99
USE1Q9NZ43 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USE1Q9NZ43 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USE1Q9NZ43 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USE1Q9NZ43 AC137767.1-201ENST00000602918 1920 ntBASIC21.23■□□□□ 0.99
USE1Q9NZ43 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USE1Q9NZ43 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USE1Q9NZ43 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
USE1Q9NZ43 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
USE1Q9NZ43 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
USE1Q9NZ43 ECEL1P1-201ENST00000373592 1742 ntBASIC21.23■□□□□ 0.99
USE1Q9NZ43 GUSBP5-202ENST00000510805 1989 ntBASIC21.23■□□□□ 0.99
USE1Q9NZ43 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms