Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
EBF3Q9H4W6 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.95■■□□□ 1.42
EBF3Q9H4W6 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.94■■□□□ 1.42
EBF3Q9H4W6 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
EBF3Q9H4W6 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
EBF3Q9H4W6 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.93■■□□□ 1.42
EBF3Q9H4W6 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.93■■□□□ 1.42
EBF3Q9H4W6 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.93■■□□□ 1.42
EBF3Q9H4W6 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
EBF3Q9H4W6 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
EBF3Q9H4W6 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 AC133561.4-201ENST00000566112 224 ntBASIC23.92■■□□□ 1.42
EBF3Q9H4W6 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
EBF3Q9H4W6 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
EBF3Q9H4W6 PBX2P1-201ENST00000493219 1291 ntBASIC23.91■■□□□ 1.42
EBF3Q9H4W6 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.91■■□□□ 1.42
EBF3Q9H4W6 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.91■■□□□ 1.42
EBF3Q9H4W6 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.91■■□□□ 1.42
EBF3Q9H4W6 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
EBF3Q9H4W6 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 AC004448.1-201ENST00000458332 883 ntBASIC23.9■■□□□ 1.42
EBF3Q9H4W6 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
EBF3Q9H4W6 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
EBF3Q9H4W6 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
EBF3Q9H4W6 AC145676.1-201ENST00000514988 2004 ntBASIC23.89■■□□□ 1.41
EBF3Q9H4W6 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
EBF3Q9H4W6 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.88■■□□□ 1.41
EBF3Q9H4W6 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.88■■□□□ 1.41
EBF3Q9H4W6 AC106739.1-201ENST00000617035 715 ntBASIC23.88■■□□□ 1.41
EBF3Q9H4W6 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
EBF3Q9H4W6 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
EBF3Q9H4W6 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.88■■□□□ 1.41
EBF3Q9H4W6 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.88■■□□□ 1.41
EBF3Q9H4W6 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.88■■□□□ 1.41
EBF3Q9H4W6 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
EBF3Q9H4W6 UNC93B3-201ENST00000308076 687 ntBASIC23.87■■□□□ 1.41
EBF3Q9H4W6 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
EBF3Q9H4W6 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.87■■□□□ 1.41
EBF3Q9H4W6 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
EBF3Q9H4W6 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
EBF3Q9H4W6 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
EBF3Q9H4W6 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
EBF3Q9H4W6 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
EBF3Q9H4W6 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
EBF3Q9H4W6 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.86■■□□□ 1.41
EBF3Q9H4W6 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.86■■□□□ 1.41
EBF3Q9H4W6 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
EBF3Q9H4W6 SRD5A1P1-201ENST00000442297 786 ntBASIC23.85■■□□□ 1.41
EBF3Q9H4W6 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
EBF3Q9H4W6 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
EBF3Q9H4W6 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
EBF3Q9H4W6 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
EBF3Q9H4W6 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
EBF3Q9H4W6 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
EBF3Q9H4W6 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.84■■□□□ 1.41
EBF3Q9H4W6 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.84■■□□□ 1.41
EBF3Q9H4W6 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
EBF3Q9H4W6 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
EBF3Q9H4W6 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
EBF3Q9H4W6 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
EBF3Q9H4W6 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.83■■□□□ 1.41
EBF3Q9H4W6 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
EBF3Q9H4W6 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
EBF3Q9H4W6 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
EBF3Q9H4W6 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.83■■□□□ 1.41
EBF3Q9H4W6 AL136162.1-201ENST00000607711 1078 ntBASIC23.83■■□□□ 1.41
EBF3Q9H4W6 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
EBF3Q9H4W6 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
EBF3Q9H4W6 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
EBF3Q9H4W6 SLC6A10P-202ENST00000431994 2058 ntBASIC23.82■■□□□ 1.4
EBF3Q9H4W6 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
EBF3Q9H4W6 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
EBF3Q9H4W6 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.82■■□□□ 1.4
EBF3Q9H4W6 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
EBF3Q9H4W6 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
EBF3Q9H4W6 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
EBF3Q9H4W6 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms