Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC30.29■■■□□ 2.44
SHANK3Q9BYB0 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SHANK3Q9BYB0 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHANK3Q9BYB0 AC099791.2-201ENST00000605725 427 ntBASIC30.29■■■□□ 2.44
SHANK3Q9BYB0 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHANK3Q9BYB0 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 AC006455.2-201ENST00000429931 906 ntBASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 RBM38-205ENST00000440234 686 ntTSL 2 BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHANK3Q9BYB0 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 AC099791.1-201ENST00000416440 715 ntBASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 RHOF-204ENST00000537265 699 ntTSL 2 BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC30.27■■■□□ 2.44
SHANK3Q9BYB0 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHANK3Q9BYB0 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC30.26■■■□□ 2.43
SHANK3Q9BYB0 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC30.26■■■□□ 2.43
SHANK3Q9BYB0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC30.26■■■□□ 2.43
SHANK3Q9BYB0 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHANK3Q9BYB0 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHANK3Q9BYB0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
SHANK3Q9BYB0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHANK3Q9BYB0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SHANK3Q9BYB0 AC092803.2-201ENST00000564287 1899 ntBASIC30.25■■■□□ 2.43
SHANK3Q9BYB0 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC30.25■■■□□ 2.43
SHANK3Q9BYB0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHANK3Q9BYB0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SHANK3Q9BYB0 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC30.24■■■□□ 2.43
SHANK3Q9BYB0 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHANK3Q9BYB0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
SHANK3Q9BYB0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC30.23■■■□□ 2.43
SHANK3Q9BYB0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC30.23■■■□□ 2.43
SHANK3Q9BYB0 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SHANK3Q9BYB0 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SHANK3Q9BYB0 AC009102.2-201ENST00000606772 1639 ntBASIC30.23■■■□□ 2.43
SHANK3Q9BYB0 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC30.23■■■□□ 2.43
SHANK3Q9BYB0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 AC136469.2-201ENST00000623944 1028 ntBASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 AL138724.1-201ENST00000606771 1088 ntBASIC30.22■■■□□ 2.43
SHANK3Q9BYB0 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SHANK3Q9BYB0 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC30.21■■■□□ 2.43
SHANK3Q9BYB0 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHANK3Q9BYB0 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHANK3Q9BYB0 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHANK3Q9BYB0 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
SHANK3Q9BYB0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SHANK3Q9BYB0 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC30.21■■■□□ 2.43
SHANK3Q9BYB0 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
SHANK3Q9BYB0 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC30.2■■■□□ 2.43
SHANK3Q9BYB0 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC30.2■■■□□ 2.43
SHANK3Q9BYB0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC30.2■■■□□ 2.42
SHANK3Q9BYB0 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
SHANK3Q9BYB0 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC30.2■■■□□ 2.42
SHANK3Q9BYB0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 REST-206ENST00000612429 1376 ntTSL 5 BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 REST-207ENST00000616975 1370 ntTSL 5 BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHANK3Q9BYB0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
SHANK3Q9BYB0 STK32C-205ENST00000456004 607 ntTSL 2 BASIC30.17■■■□□ 2.42
SHANK3Q9BYB0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC30.17■■■□□ 2.42
SHANK3Q9BYB0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC30.17■■■□□ 2.42
SHANK3Q9BYB0 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms