Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
MSH6P52701 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
MSH6P52701 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
MSH6P52701 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC32.39■■■□□ 2.78
MSH6P52701 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC32.39■■■□□ 2.78
MSH6P52701 RAB43-208ENST00000615093 783 ntTSL 5 BASIC32.39■■■□□ 2.78
MSH6P52701 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
MSH6P52701 REST-206ENST00000612429 1376 ntTSL 5 BASIC32.38■■■□□ 2.77
MSH6P52701 REST-207ENST00000616975 1370 ntTSL 5 BASIC32.38■■■□□ 2.77
MSH6P52701 SHF-206ENST00000560471 2499 ntTSL 5 BASIC32.38■■■□□ 2.77
MSH6P52701 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
MSH6P52701 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
MSH6P52701 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
MSH6P52701 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
MSH6P52701 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC32.37■■■□□ 2.77
MSH6P52701 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC32.37■■■□□ 2.77
MSH6P52701 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
MSH6P52701 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
MSH6P52701 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
MSH6P52701 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
MSH6P52701 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
MSH6P52701 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC32.37■■■□□ 2.77
MSH6P52701 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC32.37■■■□□ 2.77
MSH6P52701 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC32.36■■■□□ 2.77
MSH6P52701 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
MSH6P52701 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC32.36■■■□□ 2.77
MSH6P52701 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC32.36■■■□□ 2.77
MSH6P52701 VPS53-216ENST00000574029 585 ntTSL 4 BASIC32.36■■■□□ 2.77
MSH6P52701 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
MSH6P52701 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
MSH6P52701 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
MSH6P52701 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
MSH6P52701 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC32.35■■■□□ 2.77
MSH6P52701 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC32.35■■■□□ 2.77
MSH6P52701 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
MSH6P52701 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC32.34■■■□□ 2.77
MSH6P52701 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC32.34■■■□□ 2.77
MSH6P52701 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
MSH6P52701 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
MSH6P52701 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
MSH6P52701 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC32.33■■■□□ 2.77
MSH6P52701 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC32.33■■■□□ 2.77
MSH6P52701 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC32.33■■■□□ 2.77
MSH6P52701 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC32.33■■■□□ 2.77
MSH6P52701 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC32.32■■■□□ 2.77
MSH6P52701 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC32.32■■■□□ 2.77
MSH6P52701 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH6P52701 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH6P52701 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH6P52701 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
MSH6P52701 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC32.32■■■□□ 2.76
MSH6P52701 HLA-L-209ENST00000420110 1011 ntBASIC32.32■■■□□ 2.76
MSH6P52701 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
MSH6P52701 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC32.32■■■□□ 2.76
MSH6P52701 AC009102.2-201ENST00000606772 1639 ntBASIC32.31■■■□□ 2.76
MSH6P52701 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
MSH6P52701 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
MSH6P52701 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC32.31■■■□□ 2.76
MSH6P52701 NME4-202ENST00000382940 766 ntTSL 3 BASIC32.31■■■□□ 2.76
MSH6P52701 AC027612.3-201ENST00000413684 1047 ntBASIC32.31■■■□□ 2.76
MSH6P52701 NME4-211ENST00000620944 1193 ntTSL 2 BASIC32.31■■■□□ 2.76
MSH6P52701 AC241377.3-202ENST00000626088 1088 ntBASIC32.31■■■□□ 2.76
MSH6P52701 AC241585.3-202ENST00000628937 1088 ntBASIC32.31■■■□□ 2.76
MSH6P52701 AC245100.8-202ENST00000629247 1058 ntBASIC32.31■■■□□ 2.76
MSH6P52701 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
MSH6P52701 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
MSH6P52701 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC32.3■■■□□ 2.76
MSH6P52701 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
MSH6P52701 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC32.3■■■□□ 2.76
MSH6P52701 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC32.3■■■□□ 2.76
MSH6P52701 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC32.3■■■□□ 2.76
MSH6P52701 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC32.3■■■□□ 2.76
MSH6P52701 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
MSH6P52701 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
MSH6P52701 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC32.29■■■□□ 2.76
MSH6P52701 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
MSH6P52701 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC32.28■■■□□ 2.76
MSH6P52701 SNX3-202ENST00000349379 890 ntTSL 2 BASIC32.28■■■□□ 2.76
MSH6P52701 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC32.28■■■□□ 2.76
MSH6P52701 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC32.28■■■□□ 2.76
MSH6P52701 C17orf82-201ENST00000623772 1530 ntBASIC32.27■■■□□ 2.76
MSH6P52701 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC32.27■■■□□ 2.76
MSH6P52701 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC32.27■■■□□ 2.76
MSH6P52701 AC006455.2-201ENST00000429931 906 ntBASIC32.27■■■□□ 2.76
MSH6P52701 AC123595.1-201ENST00000440769 1046 ntBASIC32.27■■■□□ 2.76
MSH6P52701 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC32.27■■■□□ 2.76
MSH6P52701 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC32.26■■■□□ 2.76
MSH6P52701 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.76
MSH6P52701 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC32.26■■■□□ 2.75
MSH6P52701 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC32.26■■■□□ 2.75
MSH6P52701 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC32.26■■■□□ 2.75
MSH6P52701 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC32.26■■■□□ 2.75
MSH6P52701 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC32.26■■■□□ 2.75
MSH6P52701 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC32.25■■■□□ 2.75
MSH6P52701 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC32.25■■■□□ 2.75
MSH6P52701 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC32.25■■■□□ 2.75
MSH6P52701 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
MSH6P52701 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC32.24■■■□□ 2.75
MSH6P52701 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
MSH6P52701 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms