Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.48■□□□□ 0.71
PDLIM4P50479 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM4P50479 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM4P50479 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.47■□□□□ 0.71
PDLIM4P50479 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM4P50479 AC004448.1-201ENST00000458332 883 ntBASIC19.47■□□□□ 0.71
PDLIM4P50479 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.47■□□□□ 0.71
PDLIM4P50479 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.47■□□□□ 0.71
PDLIM4P50479 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.47■□□□□ 0.71
PDLIM4P50479 AC005837.3-201ENST00000612163 286 ntBASIC19.47■□□□□ 0.71
PDLIM4P50479 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.47■□□□□ 0.71
PDLIM4P50479 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM4P50479 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.47■□□□□ 0.71
PDLIM4P50479 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
PDLIM4P50479 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM4P50479 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM4P50479 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM4P50479 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
PDLIM4P50479 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.46■□□□□ 0.71
PDLIM4P50479 AC133561.4-201ENST00000566112 224 ntBASIC19.46■□□□□ 0.71
PDLIM4P50479 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PDLIM4P50479 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.45■□□□□ 0.7
PDLIM4P50479 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM4P50479 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM4P50479 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.45■□□□□ 0.7
PDLIM4P50479 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
PDLIM4P50479 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.45■□□□□ 0.7
PDLIM4P50479 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.45■□□□□ 0.7
PDLIM4P50479 SRD5A1P1-201ENST00000442297 786 ntBASIC19.45■□□□□ 0.7
PDLIM4P50479 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM4P50479 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.45■□□□□ 0.7
PDLIM4P50479 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM4P50479 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
PDLIM4P50479 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PDLIM4P50479 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM4P50479 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PDLIM4P50479 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM4P50479 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PDLIM4P50479 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM4P50479 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM4P50479 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PDLIM4P50479 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PDLIM4P50479 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM4P50479 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM4P50479 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM4P50479 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.43■□□□□ 0.7
PDLIM4P50479 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM4P50479 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.43■□□□□ 0.7
PDLIM4P50479 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PDLIM4P50479 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.43■□□□□ 0.7
PDLIM4P50479 AC005703.6-201ENST00000623265 1329 ntBASIC19.43■□□□□ 0.7
PDLIM4P50479 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM4P50479 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM4P50479 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM4P50479 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.42■□□□□ 0.7
PDLIM4P50479 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM4P50479 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM4P50479 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM4P50479 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM4P50479 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
PDLIM4P50479 PBX2P1-201ENST00000493219 1291 ntBASIC19.42■□□□□ 0.7
PDLIM4P50479 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM4P50479 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM4P50479 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
PDLIM4P50479 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM4P50479 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM4P50479 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM4P50479 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.41■□□□□ 0.7
PDLIM4P50479 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.41■□□□□ 0.7
PDLIM4P50479 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM4P50479 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM4P50479 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM4P50479 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.41■□□□□ 0.7
PDLIM4P50479 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM4P50479 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM4P50479 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM4P50479 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.4■□□□□ 0.7
PDLIM4P50479 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PDLIM4P50479 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PDLIM4P50479 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PDLIM4P50479 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.4■□□□□ 0.7
PDLIM4P50479 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PDLIM4P50479 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PDLIM4P50479 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.4■□□□□ 0.7
PDLIM4P50479 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.4■□□□□ 0.7
PDLIM4P50479 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PDLIM4P50479 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.39■□□□□ 0.7
PDLIM4P50479 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM4P50479 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM4P50479 UNC93B3-201ENST00000308076 687 ntBASIC19.39■□□□□ 0.69
PDLIM4P50479 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.39■□□□□ 0.69
PDLIM4P50479 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms