Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLPTM1O96005 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLPTM1O96005 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.55■■□□□ 1.04
CLPTM1O96005 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CLPTM1O96005 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.55■■□□□ 1.04
CLPTM1O96005 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLPTM1O96005 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.55■■□□□ 1.04
CLPTM1O96005 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLPTM1O96005 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.55■■□□□ 1.04
CLPTM1O96005 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
CLPTM1O96005 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.55■■□□□ 1.04
CLPTM1O96005 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLPTM1O96005 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CLPTM1O96005 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLPTM1O96005 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLPTM1O96005 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLPTM1O96005 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CLPTM1O96005 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.54■■□□□ 1.04
CLPTM1O96005 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.54■■□□□ 1.04
CLPTM1O96005 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
CLPTM1O96005 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CLPTM1O96005 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLPTM1O96005 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
CLPTM1O96005 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLPTM1O96005 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CLPTM1O96005 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CLPTM1O96005 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLPTM1O96005 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CLPTM1O96005 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CLPTM1O96005 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLPTM1O96005 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLPTM1O96005 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLPTM1O96005 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLPTM1O96005 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CLPTM1O96005 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.52■■□□□ 1.04
CLPTM1O96005 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLPTM1O96005 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLPTM1O96005 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.52■■□□□ 1.04
CLPTM1O96005 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLPTM1O96005 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CLPTM1O96005 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.52■■□□□ 1.04
CLPTM1O96005 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CLPTM1O96005 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.52■■□□□ 1.04
CLPTM1O96005 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CLPTM1O96005 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLPTM1O96005 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
CLPTM1O96005 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
CLPTM1O96005 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CLPTM1O96005 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.51■■□□□ 1.03
CLPTM1O96005 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLPTM1O96005 FOXO3B-201ENST00000395675 1928 ntBASIC21.51■■□□□ 1.03
CLPTM1O96005 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLPTM1O96005 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.51■■□□□ 1.03
CLPTM1O96005 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLPTM1O96005 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLPTM1O96005 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLPTM1O96005 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.51■■□□□ 1.03
CLPTM1O96005 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.51■■□□□ 1.03
CLPTM1O96005 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.51■■□□□ 1.03
CLPTM1O96005 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLPTM1O96005 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLPTM1O96005 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLPTM1O96005 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
CLPTM1O96005 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 GUSBP5-202ENST00000510805 1989 ntBASIC21.5■■□□□ 1.03
CLPTM1O96005 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLPTM1O96005 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLPTM1O96005 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLPTM1O96005 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLPTM1O96005 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLPTM1O96005 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLPTM1O96005 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLPTM1O96005 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLPTM1O96005 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLPTM1O96005 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 AL137060.1-201ENST00000618151 2648 ntBASIC21.48■■□□□ 1.03
CLPTM1O96005 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.48■■□□□ 1.03
CLPTM1O96005 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.48■■□□□ 1.03
CLPTM1O96005 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CLPTM1O96005 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.48■■□□□ 1.03
CLPTM1O96005 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLPTM1O96005 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.47■■□□□ 1.03
CLPTM1O96005 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
CLPTM1O96005 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLPTM1O96005 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms