Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LDB3O75112 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LDB3O75112 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LDB3O75112 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
LDB3O75112 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
LDB3O75112 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.64■■□□□ 1.05
LDB3O75112 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.64■■□□□ 1.05
LDB3O75112 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LDB3O75112 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.64■■□□□ 1.05
LDB3O75112 AC004812.2-201ENST00000611079 2094 ntBASIC21.64■■□□□ 1.05
LDB3O75112 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDB3O75112 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDB3O75112 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDB3O75112 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LDB3O75112 AC141586.4-201ENST00000624558 1573 ntBASIC21.63■■□□□ 1.05
LDB3O75112 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.63■■□□□ 1.05
LDB3O75112 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
LDB3O75112 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LDB3O75112 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.63■■□□□ 1.05
LDB3O75112 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
LDB3O75112 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.63■■□□□ 1.05
LDB3O75112 AC093323.1-202ENST00000635031 2045 ntBASIC21.63■■□□□ 1.05
LDB3O75112 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDB3O75112 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LDB3O75112 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.63■■□□□ 1.05
LDB3O75112 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LDB3O75112 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDB3O75112 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
LDB3O75112 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDB3O75112 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LDB3O75112 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.62■■□□□ 1.05
LDB3O75112 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDB3O75112 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.62■■□□□ 1.05
LDB3O75112 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
LDB3O75112 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.62■■□□□ 1.05
LDB3O75112 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.62■■□□□ 1.05
LDB3O75112 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.61■■□□□ 1.05
LDB3O75112 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LDB3O75112 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LDB3O75112 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.61■■□□□ 1.05
LDB3O75112 AC092028.1-203ENST00000608262 953 ntBASIC21.61■■□□□ 1.05
LDB3O75112 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LDB3O75112 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.61■■□□□ 1.05
LDB3O75112 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDB3O75112 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDB3O75112 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDB3O75112 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.6■■□□□ 1.05
LDB3O75112 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDB3O75112 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDB3O75112 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.6■■□□□ 1.05
LDB3O75112 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.6■■□□□ 1.05
LDB3O75112 SNX5-217ENST00000606557 1087 ntBASIC21.6■■□□□ 1.05
LDB3O75112 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDB3O75112 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LDB3O75112 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDB3O75112 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDB3O75112 AC004448.1-201ENST00000458332 883 ntBASIC21.59■■□□□ 1.05
LDB3O75112 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDB3O75112 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDB3O75112 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
LDB3O75112 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LDB3O75112 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LDB3O75112 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.58■■□□□ 1.05
LDB3O75112 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.58■■□□□ 1.05
LDB3O75112 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LDB3O75112 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.58■■□□□ 1.05
LDB3O75112 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.58■■□□□ 1.05
LDB3O75112 TSPY9P-201ENST00000440215 945 ntBASIC21.58■■□□□ 1.05
LDB3O75112 TSPY11P-201ENST00000442607 1045 ntBASIC21.58■■□□□ 1.05
LDB3O75112 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.58■■□□□ 1.05
LDB3O75112 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
LDB3O75112 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LDB3O75112 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LDB3O75112 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
LDB3O75112 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
LDB3O75112 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LDB3O75112 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
LDB3O75112 GUSBP5-201ENST00000418136 578 ntBASIC21.57■■□□□ 1.04
LDB3O75112 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.57■■□□□ 1.04
LDB3O75112 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LDB3O75112 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.57■■□□□ 1.04
LDB3O75112 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.57■■□□□ 1.04
LDB3O75112 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LDB3O75112 ABCB10P4-201ENST00000566803 2184 ntBASIC21.57■■□□□ 1.04
LDB3O75112 AL161729.1-201ENST00000604104 1402 ntBASIC21.56■■□□□ 1.04
LDB3O75112 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.56■■□□□ 1.04
LDB3O75112 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDB3O75112 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDB3O75112 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDB3O75112 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDB3O75112 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
LDB3O75112 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.56■■□□□ 1.04
LDB3O75112 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDB3O75112 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
LDB3O75112 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.56■■□□□ 1.04
LDB3O75112 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
LDB3O75112 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.56■■□□□ 1.04
LDB3O75112 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
LDB3O75112 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.55■■□□□ 1.04
LDB3O75112 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms