Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AL022069.1-201ENST00000568025 1636 ntBASIC23.54■■□□□ 1.36
CBX4O00257 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CBX4O00257 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
CBX4O00257 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
CBX4O00257 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
CBX4O00257 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.53■■□□□ 1.36
CBX4O00257 AC004448.1-201ENST00000458332 883 ntBASIC23.53■■□□□ 1.36
CBX4O00257 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CBX4O00257 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CBX4O00257 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.52■■□□□ 1.36
CBX4O00257 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.52■■□□□ 1.36
CBX4O00257 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.52■■□□□ 1.36
CBX4O00257 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
CBX4O00257 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
CBX4O00257 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CBX4O00257 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CBX4O00257 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.51■■□□□ 1.35
CBX4O00257 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CBX4O00257 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.51■■□□□ 1.35
CBX4O00257 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CBX4O00257 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
CBX4O00257 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CBX4O00257 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.5■■□□□ 1.35
CBX4O00257 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.5■■□□□ 1.35
CBX4O00257 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CBX4O00257 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.5■■□□□ 1.35
CBX4O00257 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
CBX4O00257 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.5■■□□□ 1.35
CBX4O00257 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CBX4O00257 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CBX4O00257 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CBX4O00257 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CBX4O00257 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CBX4O00257 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.49■■□□□ 1.35
CBX4O00257 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CBX4O00257 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CBX4O00257 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
CBX4O00257 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.49■■□□□ 1.35
CBX4O00257 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.49■■□□□ 1.35
CBX4O00257 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.49■■□□□ 1.35
CBX4O00257 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CBX4O00257 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.49■■□□□ 1.35
CBX4O00257 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CBX4O00257 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
CBX4O00257 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.48■■□□□ 1.35
CBX4O00257 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
CBX4O00257 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
CBX4O00257 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CBX4O00257 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CBX4O00257 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CBX4O00257 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CBX4O00257 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CBX4O00257 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
CBX4O00257 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.47■■□□□ 1.35
CBX4O00257 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
CBX4O00257 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CBX4O00257 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CBX4O00257 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CBX4O00257 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.47■■□□□ 1.35
CBX4O00257 MIR935-201ENST00000401179 91 ntBASIC23.47■■□□□ 1.35
CBX4O00257 MIR6722-201ENST00000617286 78 ntBASIC23.47■■□□□ 1.35
CBX4O00257 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CBX4O00257 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.47■■□□□ 1.35
CBX4O00257 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
CBX4O00257 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CBX4O00257 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CBX4O00257 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.47■■□□□ 1.35
CBX4O00257 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
CBX4O00257 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CBX4O00257 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.46■■□□□ 1.35
CBX4O00257 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CBX4O00257 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CBX4O00257 MIR6724-1-201ENST00000616420 92 ntBASIC23.46■■□□□ 1.35
CBX4O00257 MIR6724-2-201ENST00000616483 92 ntBASIC23.46■■□□□ 1.35
CBX4O00257 MIR6724-4-201ENST00000617390 92 ntBASIC23.46■■□□□ 1.35
CBX4O00257 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.46■■□□□ 1.35
CBX4O00257 MIR6724-3-201ENST00000622482 92 ntBASIC23.46■■□□□ 1.35
CBX4O00257 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.35
CBX4O00257 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.45■■□□□ 1.34
CBX4O00257 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.45■■□□□ 1.34
CBX4O00257 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.45■■□□□ 1.34
CBX4O00257 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.45■■□□□ 1.34
CBX4O00257 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.45■■□□□ 1.34
CBX4O00257 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
CBX4O00257 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.44■■□□□ 1.34
CBX4O00257 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CBX4O00257 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CBX4O00257 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.44■■□□□ 1.34
CBX4O00257 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.44■■□□□ 1.34
CBX4O00257 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
CBX4O00257 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CBX4O00257 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.43■■□□□ 1.34
CBX4O00257 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CBX4O00257 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CBX4O00257 LINC01124-201ENST00000409786 2117 ntBASIC23.42■■□□□ 1.34
CBX4O00257 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CBX4O00257 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.42■■□□□ 1.34
CBX4O00257 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CBX4O00257 AL139125.2-201ENST00000623134 1869 ntBASIC23.42■■□□□ 1.34
CBX4O00257 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms