Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 AC104982.3-201ENST00000581995 514 ntBASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 ECM1P1-201ENST00000604092 1279 ntBASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 AC148477.4-201ENST00000613430 1793 ntBASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX2IPQ9Y2D8 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AC079178.1-201ENST00000420915 656 ntBASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CNN2P10-201ENST00000443067 918 ntBASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AC091804.1-201ENST00000486888 567 ntBASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 RPSAP36-202ENST00000494591 1261 ntBASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 LINC02447-202ENST00000501888 2146 ntBASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSX2IPQ9Y2D8 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 CTBP1-AS2-206ENST00000581398 5652 ntBASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 RPL5P21-201ENST00000404620 815 ntBASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.29■□□□□ 0.2
SSX2IPQ9Y2D8 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms