Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 SCARNA12-201ENST00000459155 270 ntBASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AC093909.3-201ENST00000504783 336 ntBASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 IGHV1-12-201ENST00000518307 205 ntBASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AC068867.1-201ENST00000559855 150 ntBASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AC018695.6-201ENST00000614011 534 ntBASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AC025183.3-201ENST00000623526 1482 ntBASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK3Q9BYB0 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 LINC00431-202ENST00000636375 159 ntBASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 DDX39AP1-201ENST00000445147 1181 ntBASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 SIGLEC22P-201ENST00000599104 714 ntBASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 AC012073.1-201ENST00000606114 1108 ntBASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SHANK3Q9BYB0 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 PPP1R2P4-201ENST00000424051 595 ntBASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 AP000322.3-201ENST00000608665 388 ntBASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 AC073592.2-201ENST00000623062 780 ntBASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK3Q9BYB0 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms