Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 KRT18P13-201ENST00000400056 1290 ntBASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AC107890.1-201ENST00000422478 521 ntBASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AC114501.2-201ENST00000439631 535 ntBASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AC027369.6-201ENST00000525520 931 ntBASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AC092865.5-201ENST00000545435 363 ntBASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 GRK6P1-201ENST00000400595 1711 ntBASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 MEIS3P1-201ENST00000495167 958 ntBASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 Z92544.3-201ENST00000624747 417 ntBASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 AC107918.4-201ENST00000641966 3141 ntBASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC54Q8NEL0 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms