Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.61■□□□□ 0.57
SYNE4Q8N205 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 MIR4750-201ENST00000584564 56 ntBASIC18.61■□□□□ 0.57
SYNE4Q8N205 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 AL162727.3-201ENST00000635661 2787 ntBASIC18.61■□□□□ 0.57
SYNE4Q8N205 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 PPT1-215ENST00000641471 2368 ntBASIC18.61■□□□□ 0.57
SYNE4Q8N205 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 CICP12-201ENST00000455801 843 ntBASIC18.6■□□□□ 0.57
SYNE4Q8N205 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 AC009779.1-201ENST00000551138 283 ntBASIC18.6■□□□□ 0.57
SYNE4Q8N205 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 AL353770.1-201ENST00000614915 403 ntBASIC18.6■□□□□ 0.57
SYNE4Q8N205 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 TMBIM7P-203ENST00000641617 1718 ntBASIC18.6■□□□□ 0.57
SYNE4Q8N205 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE4Q8N205 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE4Q8N205 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 PDIA3P2-201ENST00000428073 158 ntBASIC18.59■□□□□ 0.57
SYNE4Q8N205 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 AC020922.3-201ENST00000595064 547 ntBASIC18.59■□□□□ 0.57
SYNE4Q8N205 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.59■□□□□ 0.57
SYNE4Q8N205 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE4Q8N205 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms