Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC20.51■□□□□ 0.87
MSH6P52701 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 AL022334.2-201ENST00000610000 484 ntBASIC20.51■□□□□ 0.87
MSH6P52701 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH6P52701 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
MSH6P52701 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
MSH6P52701 BLK-205ENST00000529894 2017 ntTSL 5 BASIC20.5■□□□□ 0.87
MSH6P52701 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
MSH6P52701 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
MSH6P52701 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH6P52701 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC20.5■□□□□ 0.87
MSH6P52701 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH6P52701 AL135901.1-201ENST00000451812 333 ntBASIC20.5■□□□□ 0.87
MSH6P52701 DUX4L50-201ENST00000455245 715 ntBASIC20.5■□□□□ 0.87
MSH6P52701 RHEB-207ENST00000496004 744 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH6P52701 AC007952.4-201ENST00000573866 637 ntBASIC20.5■□□□□ 0.87
MSH6P52701 BX088702.1-201ENST00000610784 235 ntBASIC20.5■□□□□ 0.87
MSH6P52701 AC002044.2-201ENST00000624910 970 ntBASIC20.5■□□□□ 0.87
MSH6P52701 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 BANP-204ENST00000393208 2283 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH6P52701 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
MSH6P52701 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH6P52701 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
MSH6P52701 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
MSH6P52701 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 AHCYP4-201ENST00000419201 1315 ntBASIC20.5■□□□□ 0.87
MSH6P52701 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH6P52701 REXO1L4P-201ENST00000605109 1937 ntBASIC20.49■□□□□ 0.87
MSH6P52701 ZNF436-AS1-201ENST00000335648 2547 ntBASIC20.49■□□□□ 0.87
MSH6P52701 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 HNRNPA1P58-201ENST00000403629 610 ntBASIC20.49■□□□□ 0.87
MSH6P52701 RPL35P9-201ENST00000446059 350 ntBASIC20.49■□□□□ 0.87
MSH6P52701 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC20.49■□□□□ 0.87
MSH6P52701 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC20.49■□□□□ 0.87
MSH6P52701 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC20.49■□□□□ 0.87
MSH6P52701 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC20.49■□□□□ 0.87
MSH6P52701 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 AL391005.1-201ENST00000623953 2435 ntBASIC20.49■□□□□ 0.87
MSH6P52701 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 AC112504.1-201ENST00000623415 1841 ntBASIC20.49■□□□□ 0.87
MSH6P52701 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC20.49■□□□□ 0.87
MSH6P52701 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 SLC9A7P1-202ENST00000556476 2239 ntBASIC20.49■□□□□ 0.87
MSH6P52701 ZBED1P1-201ENST00000502364 1930 ntBASIC20.49■□□□□ 0.87
MSH6P52701 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH6P52701 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC20.48■□□□□ 0.87
MSH6P52701 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC20.48■□□□□ 0.87
MSH6P52701 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC20.48■□□□□ 0.87
MSH6P52701 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
MSH6P52701 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC20.48■□□□□ 0.87
MSH6P52701 HERC2P11-201ENST00000562845 725 ntBASIC20.48■□□□□ 0.87
MSH6P52701 AC100756.2-201ENST00000569537 736 ntBASIC20.48■□□□□ 0.87
MSH6P52701 AP005212.2-201ENST00000584979 510 ntBASIC20.48■□□□□ 0.87
MSH6P52701 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC20.48■□□□□ 0.87
MSH6P52701 AC140113.1-201ENST00000603467 169 ntBASIC20.48■□□□□ 0.87
MSH6P52701 AL139339.2-201ENST00000608063 657 ntBASIC20.48■□□□□ 0.87
MSH6P52701 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC20.48■□□□□ 0.87
MSH6P52701 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
MSH6P52701 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
MSH6P52701 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
MSH6P52701 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC20.48■□□□□ 0.87
MSH6P52701 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC20.48■□□□□ 0.87
MSH6P52701 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH6P52701 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms