Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 TPO-206ENST00000382269 1155 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 AC104457.1-201ENST00000401024 814 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 AL139094.1-201ENST00000405549 1188 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 GPAA1P2-201ENST00000417923 928 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC11.73□□□□□ -0.53
HOXD3P31249 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 FAM197Y7-201ENST00000432892 766 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC11.73□□□□□ -0.53
HOXD3P31249 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC11.73□□□□□ -0.53
HOXD3P31249 AHRR-211ENST00000515206 462 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC11.73□□□□□ -0.53
HOXD3P31249 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC11.73□□□□□ -0.53
HOXD3P31249 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC11.73□□□□□ -0.53
HOXD3P31249 AC023310.1-201ENST00000554836 735 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 AC012508.2-201ENST00000567613 1472 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 GNRHR2-203ENST00000581100 1187 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 AC138951.2-201ENST00000623455 1161 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HOXD3P31249 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
HOXD3P31249 PPT1-215ENST00000641471 2368 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 PRSS30P-206ENST00000641773 873 ntBASIC11.73□□□□□ -0.53
HOXD3P31249 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC11.73□□□□□ -0.53
HOXD3P31249 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HOXD3P31249 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
HOXD3P31249 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
HOXD3P31249 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC11.72□□□□□ -0.53
HOXD3P31249 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
HOXD3P31249 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 KRT8P14-201ENST00000414254 1442 ntBASIC11.72□□□□□ -0.53
HOXD3P31249 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 AC073347.1-201ENST00000421633 2643 ntBASIC11.72□□□□□ -0.53
HOXD3P31249 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC11.72□□□□□ -0.53
HOXD3P31249 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HOXD3P31249 ACTBP8-201ENST00000403258 1108 ntBASIC11.72□□□□□ -0.53
HOXD3P31249 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms