Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.9■□□□□ 0.3
MSH4O15457 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 TNRC18P2-201ENST00000417666 2714 ntBASIC16.9■□□□□ 0.3
MSH4O15457 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.9■□□□□ 0.3
MSH4O15457 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.9■□□□□ 0.3
MSH4O15457 TLE1P1-201ENST00000422965 589 ntBASIC16.9■□□□□ 0.3
MSH4O15457 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.9■□□□□ 0.3
MSH4O15457 CHMP1AP1-201ENST00000445563 662 ntBASIC16.9■□□□□ 0.3
MSH4O15457 RPL13AP20-201ENST00000459725 609 ntBASIC16.9■□□□□ 0.3
MSH4O15457 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.9■□□□□ 0.3
MSH4O15457 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSH4O15457 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.9■□□□□ 0.3
MSH4O15457 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.9■□□□□ 0.3
MSH4O15457 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.9■□□□□ 0.3
MSH4O15457 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.9■□□□□ 0.3
MSH4O15457 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 LINC01101-201ENST00000622953 1884 ntBASIC16.9■□□□□ 0.3
MSH4O15457 TUBB1P2-201ENST00000422712 1306 ntBASIC16.9■□□□□ 0.3
MSH4O15457 TUBB1P1-201ENST00000503144 1300 ntBASIC16.9■□□□□ 0.3
MSH4O15457 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.9■□□□□ 0.3
MSH4O15457 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
MSH4O15457 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.9■□□□□ 0.3
MSH4O15457 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
MSH4O15457 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
MSH4O15457 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
MSH4O15457 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.3
MSH4O15457 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
MSH4O15457 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
MSH4O15457 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MSH4O15457 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.89■□□□□ 0.29
MSH4O15457 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
MSH4O15457 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.89■□□□□ 0.29
MSH4O15457 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.89■□□□□ 0.29
MSH4O15457 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.89■□□□□ 0.29
MSH4O15457 RN7SL560P-201ENST00000577943 264 ntBASIC16.89■□□□□ 0.29
MSH4O15457 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.89■□□□□ 0.29
MSH4O15457 ZACNP1-201ENST00000612259 710 ntBASIC16.89■□□□□ 0.29
MSH4O15457 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
MSH4O15457 AL023775.1-201ENST00000454907 1746 ntBASIC16.89■□□□□ 0.29
MSH4O15457 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.89■□□□□ 0.29
MSH4O15457 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.89■□□□□ 0.29
MSH4O15457 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MSH4O15457 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.89■□□□□ 0.29
MSH4O15457 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSH4O15457 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
MSH4O15457 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH4O15457 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
MSH4O15457 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH4O15457 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
MSH4O15457 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH4O15457 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 AL136309.1-201ENST00000403917 691 ntBASIC16.88■□□□□ 0.29
MSH4O15457 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 AL355994.2-201ENST00000447882 704 ntBASIC16.88■□□□□ 0.29
MSH4O15457 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH4O15457 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.88■□□□□ 0.29
MSH4O15457 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.88■□□□□ 0.29
MSH4O15457 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.88■□□□□ 0.29
MSH4O15457 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.88■□□□□ 0.29
MSH4O15457 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.88■□□□□ 0.29
MSH4O15457 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.88■□□□□ 0.29
MSH4O15457 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 AC018442.1-201ENST00000421439 2061 ntBASIC16.88■□□□□ 0.29
MSH4O15457 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.88■□□□□ 0.29
MSH4O15457 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSH4O15457 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms