Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 ACTG1P3-201ENST00000431775 1114 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 RN7SL837P-201ENST00000463010 287 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 AC011495.1-201ENST00000498085 584 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 AC022137.2-201ENST00000503482 481 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 AC022616.1-201ENST00000518688 554 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 DUX4L47-201ENST00000566374 394 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 AC010319.3-201ENST00000597028 470 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 AC018529.2-202ENST00000611482 3087 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 AC023090.2-201ENST00000625182 2110 ntBASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ATG4BQ9Y4P1 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 EIF3FP3-201ENST00000434851 1086 ntBASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 INE1-201ENST00000456273 945 ntBASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 MIR5189-201ENST00000577370 114 ntBASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 LRRC59-203ENST00000576448 1531 ntBASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.34□□□□□ -0.11
ATG4BQ9Y4P1 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms