Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 AL512384.1-201ENST00000406683 331 ntBASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 AC007389.4-201ENST00000454674 793 ntBASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 GIMAP3P-201ENST00000495150 836 ntBASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 AC106760.1-201ENST00000508690 800 ntBASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 LINC02084-201ENST00000606069 1096 ntBASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 MTHFR-210ENST00000641407 2387 ntBASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 AC018442.1-201ENST00000421439 2061 ntBASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.42■□□□□ 0.7
SMC4Q9NTJ3 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 PKD1P5-201ENST00000532415 10291 ntBASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 CU639417.3-201ENST00000624240 1404 ntBASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SMC4Q9NTJ3 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 TTTY23B-201ENST00000442790 549 ntBASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 AC008735.3-201ENST00000596646 500 ntBASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 AC145423.3-201ENST00000615987 467 ntBASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms