Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 AL096828.3-201ENST00000615354 462 ntBASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC3Q9BQI4 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 AC020658.6-201ENST00000623564 1870 ntBASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 KRT8P14-201ENST00000414254 1442 ntBASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 AC004898.1-201ENST00000451057 766 ntBASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC3Q9BQI4 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC3Q9BQI4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.05
CCDC3Q9BQI4 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms