Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.3■□□□□ 0.36
USP28Q96RU2 AL928921.2-201ENST00000641325 2442 ntBASIC17.3■□□□□ 0.36
USP28Q96RU2 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 INTS4P2-202ENST00000614726 2019 ntBASIC17.3■□□□□ 0.36
USP28Q96RU2 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.3■□□□□ 0.36
USP28Q96RU2 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
USP28Q96RU2 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.3■□□□□ 0.36
USP28Q96RU2 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
USP28Q96RU2 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
USP28Q96RU2 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.3■□□□□ 0.36
USP28Q96RU2 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 UGT1A2P-201ENST00000454886 866 ntBASIC17.3■□□□□ 0.36
USP28Q96RU2 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.3■□□□□ 0.36
USP28Q96RU2 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.3■□□□□ 0.36
USP28Q96RU2 DUX4L47-201ENST00000566374 394 ntBASIC17.3■□□□□ 0.36
USP28Q96RU2 AC120045.2-201ENST00000567334 178 ntBASIC17.3■□□□□ 0.36
USP28Q96RU2 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.3■□□□□ 0.36
USP28Q96RU2 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.3■□□□□ 0.36
USP28Q96RU2 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.3■□□□□ 0.36
USP28Q96RU2 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.3■□□□□ 0.36
USP28Q96RU2 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.3■□□□□ 0.36
USP28Q96RU2 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.3■□□□□ 0.36
USP28Q96RU2 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
USP28Q96RU2 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC17.3■□□□□ 0.36
USP28Q96RU2 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.3■□□□□ 0.36
USP28Q96RU2 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 AC006504.5-208ENST00000588784 2401 ntBASIC17.29■□□□□ 0.36
USP28Q96RU2 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 AL139094.1-201ENST00000405549 1188 ntBASIC17.29■□□□□ 0.36
USP28Q96RU2 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.29■□□□□ 0.36
USP28Q96RU2 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.29■□□□□ 0.36
USP28Q96RU2 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.29■□□□□ 0.36
USP28Q96RU2 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 TPT1P11-201ENST00000458482 498 ntBASIC17.29■□□□□ 0.36
USP28Q96RU2 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.29■□□□□ 0.36
USP28Q96RU2 RRP7BP-205ENST00000566851 833 ntBASIC17.29■□□□□ 0.36
USP28Q96RU2 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 BX539320.1-201ENST00000623759 877 ntBASIC17.29■□□□□ 0.36
USP28Q96RU2 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USP28Q96RU2 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 AC136759.1-202ENST00000530858 2194 ntBASIC17.29■□□□□ 0.36
USP28Q96RU2 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
USP28Q96RU2 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.29■□□□□ 0.36
USP28Q96RU2 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP28Q96RU2 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.28■□□□□ 0.36
USP28Q96RU2 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.28■□□□□ 0.36
USP28Q96RU2 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.28■□□□□ 0.36
USP28Q96RU2 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USP28Q96RU2 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 AC152010.1-201ENST00000415779 2006 ntBASIC17.28■□□□□ 0.36
USP28Q96RU2 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.28■□□□□ 0.36
USP28Q96RU2 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
USP28Q96RU2 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.28■□□□□ 0.36
USP28Q96RU2 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.28■□□□□ 0.36
USP28Q96RU2 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.28■□□□□ 0.36
USP28Q96RU2 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms