Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 LHX6-205ENST00000464484 666 ntTSL 2 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 AC124283.3-201ENST00000570869 594 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 AP000845.1-201ENST00000581677 2131 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 WFDC1-204ENST00000613603 549 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 AGAP7P-201ENST00000582299 2062 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 AGAP14-201ENST00000624701 2060 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 AC012508.2-201ENST00000567613 1472 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 AC015656.1-201ENST00000624209 3578 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 REXO1L4P-201ENST00000605109 1937 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 AC007191.1-201ENST00000623179 2995 ntBASIC13.46□□□□□ -0.25
SKA3Q8IX90 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 SOCS2P1-201ENST00000417727 557 ntBASIC13.46□□□□□ -0.25
SKA3Q8IX90 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SKA3Q8IX90 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
SKA3Q8IX90 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
SKA3Q8IX90 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.46□□□□□ -0.26
SKA3Q8IX90 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
SKA3Q8IX90 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
SKA3Q8IX90 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
SKA3Q8IX90 KRT8P22-201ENST00000562317 1415 ntBASIC13.46□□□□□ -0.26
SKA3Q8IX90 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SKA3Q8IX90 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SKA3Q8IX90 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.46□□□□□ -0.26
SKA3Q8IX90 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SKA3Q8IX90 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
SKA3Q8IX90 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.45□□□□□ -0.26
SKA3Q8IX90 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AL161772.1-201ENST00000610494 4412 ntBASIC13.45□□□□□ -0.26
SKA3Q8IX90 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SKA3Q8IX90 AC093525.8-201ENST00000624099 1342 ntBASIC13.45□□□□□ -0.26
SKA3Q8IX90 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.45□□□□□ -0.26
SKA3Q8IX90 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms