Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP54Q70EL1 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
USP54Q70EL1 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP54Q70EL1 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.51■□□□□ 0.71
USP54Q70EL1 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 AGAP7P-201ENST00000582299 2062 ntBASIC19.5■□□□□ 0.71
USP54Q70EL1 AGAP14-201ENST00000624701 2060 ntBASIC19.5■□□□□ 0.71
USP54Q70EL1 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC19.5■□□□□ 0.71
USP54Q70EL1 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 HPGD-203ENST00000422112 805 ntTSL 2 BASIC19.5■□□□□ 0.71
USP54Q70EL1 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 AC114501.1-201ENST00000445949 172 ntBASIC19.5■□□□□ 0.71
USP54Q70EL1 AC018463.1-201ENST00000456674 917 ntBASIC19.5■□□□□ 0.71
USP54Q70EL1 AC026410.1-201ENST00000507366 1101 ntBASIC19.5■□□□□ 0.71
USP54Q70EL1 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC19.5■□□□□ 0.71
USP54Q70EL1 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
USP54Q70EL1 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.5■□□□□ 0.71
USP54Q70EL1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.5■□□□□ 0.71
USP54Q70EL1 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 AP003680.1-201ENST00000598970 3660 ntBASIC19.5■□□□□ 0.71
USP54Q70EL1 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP54Q70EL1 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 AP000911.2-201ENST00000534330 502 ntBASIC19.49■□□□□ 0.71
USP54Q70EL1 SORD2P-201ENST00000558556 1069 ntBASIC19.49■□□□□ 0.71
USP54Q70EL1 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC19.49■□□□□ 0.71
USP54Q70EL1 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
USP54Q70EL1 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC19.49■□□□□ 0.71
USP54Q70EL1 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC19.49■□□□□ 0.71
USP54Q70EL1 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 AC006486.2-201ENST00000624246 2199 ntBASIC19.49■□□□□ 0.71
USP54Q70EL1 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 AC015688.4-201ENST00000580780 1647 ntBASIC19.49■□□□□ 0.71
USP54Q70EL1 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 ERP29P1-201ENST00000442902 706 ntBASIC19.49■□□□□ 0.71
USP54Q70EL1 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP54Q70EL1 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 MT3-203ENST00000565838 421 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC19.49■□□□□ 0.71
USP54Q70EL1 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC19.49■□□□□ 0.71
USP54Q70EL1 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP54Q70EL1 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC19.49■□□□□ 0.71
USP54Q70EL1 AC018442.1-201ENST00000421439 2061 ntBASIC19.49■□□□□ 0.71
USP54Q70EL1 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC19.48■□□□□ 0.71
USP54Q70EL1 PRAL-201ENST00000624952 3286 ntBASIC19.48■□□□□ 0.71
USP54Q70EL1 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP54Q70EL1 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP54Q70EL1 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP54Q70EL1 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP54Q70EL1 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
USP54Q70EL1 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
USP54Q70EL1 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP54Q70EL1 KRT17P5-201ENST00000332088 839 ntBASIC19.48■□□□□ 0.71
USP54Q70EL1 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP54Q70EL1 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC19.48■□□□□ 0.71
USP54Q70EL1 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP54Q70EL1 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC19.48■□□□□ 0.71
USP54Q70EL1 AC104506.1-201ENST00000609247 429 ntBASIC19.48■□□□□ 0.71
USP54Q70EL1 AP001184.1-201ENST00000637936 376 ntBASIC19.48■□□□□ 0.71
USP54Q70EL1 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP54Q70EL1 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP54Q70EL1 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
USP54Q70EL1 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC19.47■□□□□ 0.71
USP54Q70EL1 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms