Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 GCSHP3-201ENST00000431120 391 ntBASIC12.26□□□□□ -0.45
VPS13CQ709C8 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 AC018529.2-202ENST00000611482 3087 ntBASIC12.26□□□□□ -0.45
VPS13CQ709C8 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 XBP1P1-201ENST00000436573 652 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 CD164-210ENST00000512821 964 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 AP001184.1-201ENST00000637936 376 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 DOC2GP-204ENST00000639052 2548 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 MIR3188-201ENST00000583494 85 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 HELLS-212ENST00000630929 400 ntTSL 5 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 AL590440.2-201ENST00000641973 1595 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 Z69890.1-201ENST00000382990 339 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 ALG3P1-201ENST00000508806 1114 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 AC090510.3-201ENST00000615831 821 ntBASIC12.25□□□□□ -0.45
VPS13CQ709C8 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.25□□□□□ -0.45
VPS13CQ709C8 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
VPS13CQ709C8 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC12.24□□□□□ -0.45
VPS13CQ709C8 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.24□□□□□ -0.45
VPS13CQ709C8 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.24□□□□□ -0.45
VPS13CQ709C8 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC12.24□□□□□ -0.45
VPS13CQ709C8 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC12.24□□□□□ -0.45
VPS13CQ709C8 DUTP3-201ENST00000450025 415 ntBASIC12.24□□□□□ -0.45
VPS13CQ709C8 PGAM1P12-201ENST00000505622 748 ntBASIC12.24□□□□□ -0.45
VPS13CQ709C8 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC12.24□□□□□ -0.45
VPS13CQ709C8 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC12.24□□□□□ -0.45
VPS13CQ709C8 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
VPS13CQ709C8 TP53-221ENST00000615910 1149 ntTSL 5 BASIC12.24□□□□□ -0.45
VPS13CQ709C8 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
VPS13CQ709C8 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms