Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ATL3Q6DD88 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
ATL3Q6DD88 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 DOC2GP-202ENST00000514950 1163 ntBASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC023310.3-201ENST00000557027 670 ntBASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC100756.1-201ENST00000562736 682 ntBASIC17.26■□□□□ 0.35
ATL3Q6DD88 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC138749.3-201ENST00000567691 622 ntBASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC092364.2-202ENST00000597012 1073 ntBASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC116165.1-201ENST00000611806 668 ntBASIC17.26■□□□□ 0.35
ATL3Q6DD88 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 AC007431.3-201ENST00000623221 587 ntBASIC17.26■□□□□ 0.35
ATL3Q6DD88 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.26■□□□□ 0.35
ATL3Q6DD88 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATL3Q6DD88 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 AC099568.2-201ENST00000609194 695 ntBASIC17.25■□□□□ 0.35
ATL3Q6DD88 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 AL390754.1-201ENST00000619088 582 ntBASIC17.25■□□□□ 0.35
ATL3Q6DD88 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC17.25■□□□□ 0.35
ATL3Q6DD88 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
ATL3Q6DD88 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATL3Q6DD88 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms