Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.02□□□□□ -0.32
ABCA4P78363 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 PDIA3P2-201ENST00000428073 158 ntBASIC13.02□□□□□ -0.32
ABCA4P78363 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.02□□□□□ -0.32
ABCA4P78363 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.02□□□□□ -0.32
ABCA4P78363 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.02□□□□□ -0.32
ABCA4P78363 HLA-J-204ENST00000495278 958 ntBASIC13.02□□□□□ -0.32
ABCA4P78363 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
ABCA4P78363 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.02□□□□□ -0.32
ABCA4P78363 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.02□□□□□ -0.32
ABCA4P78363 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.02□□□□□ -0.32
ABCA4P78363 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.02□□□□□ -0.32
ABCA4P78363 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.02□□□□□ -0.32
ABCA4P78363 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
ABCA4P78363 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.02□□□□□ -0.32
ABCA4P78363 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.02□□□□□ -0.33
ABCA4P78363 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.02□□□□□ -0.33
ABCA4P78363 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.02□□□□□ -0.33
ABCA4P78363 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.02□□□□□ -0.33
ABCA4P78363 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.02□□□□□ -0.33
ABCA4P78363 AC005324.6-201ENST00000587972 613 ntBASIC13.02□□□□□ -0.33
ABCA4P78363 AC091544.8-201ENST00000619490 361 ntBASIC13.02□□□□□ -0.33
ABCA4P78363 AC004923.1-202ENST00000642106 209 ntBASIC13.02□□□□□ -0.33
ABCA4P78363 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 FKBP4P6-201ENST00000457486 1332 ntBASIC13.02□□□□□ -0.33
ABCA4P78363 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC13.02□□□□□ -0.33
ABCA4P78363 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.02□□□□□ -0.33
ABCA4P78363 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ABCA4P78363 AC127383.1-201ENST00000444697 1800 ntBASIC13.01□□□□□ -0.33
ABCA4P78363 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
ABCA4P78363 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.01□□□□□ -0.33
ABCA4P78363 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.01□□□□□ -0.33
ABCA4P78363 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 AC135983.4-201ENST00000564116 1262 ntBASIC13.01□□□□□ -0.33
ABCA4P78363 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 AC025181.2-201ENST00000606994 802 ntBASIC13.01□□□□□ -0.33
ABCA4P78363 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms