Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDH9Q9HC56 AP001267.2-201ENST00000532619 2086 ntBASIC15.67■□□□□ 0.1
PCDH9Q9HC56 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 GAPDHP40-201ENST00000505218 1006 ntBASIC15.67■□□□□ 0.1
PCDH9Q9HC56 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 AC093726.1-201ENST00000608064 963 ntBASIC15.67■□□□□ 0.1
PCDH9Q9HC56 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDH9Q9HC56 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 AC104596.2-201ENST00000512793 793 ntBASIC15.66■□□□□ 0.1
PCDH9Q9HC56 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 API5-211ENST00000534695 560 ntTSL 5 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 AC190387.1-201ENST00000551683 408 ntBASIC15.66■□□□□ 0.1
PCDH9Q9HC56 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 CHCHD2P3-201ENST00000603038 451 ntBASIC15.66■□□□□ 0.1
PCDH9Q9HC56 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms