Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 DGCR5-201ENST00000399539 862 ntBASIC13.49□□□□□ -0.25
SKA3Q8IX90 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 WASH4P-201ENST00000564273 1246 ntBASIC13.49□□□□□ -0.25
SKA3Q8IX90 SAMD11P1-201ENST00000571429 661 ntBASIC13.49□□□□□ -0.25
SKA3Q8IX90 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 AC093813.1-201ENST00000605066 256 ntBASIC13.49□□□□□ -0.25
SKA3Q8IX90 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 OR2I1P-209ENST00000641730 5365 ntBASIC13.48□□□□□ -0.25
SKA3Q8IX90 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 C1QBPP1-201ENST00000400117 770 ntBASIC13.48□□□□□ -0.25
SKA3Q8IX90 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 AC133539.2-201ENST00000604757 467 ntBASIC13.48□□□□□ -0.25
SKA3Q8IX90 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 AC007787.1-201ENST00000588095 1583 ntBASIC13.48□□□□□ -0.25
SKA3Q8IX90 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 AC097376.2-205ENST00000610159 5334 ntBASIC13.48□□□□□ -0.25
SKA3Q8IX90 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
SKA3Q8IX90 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.48□□□□□ -0.25
SKA3Q8IX90 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SKA3Q8IX90 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
SKA3Q8IX90 WASH3P-207ENST00000560956 1394 ntBASIC13.47□□□□□ -0.25
SKA3Q8IX90 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms