Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CLRN1P58418 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 AL391825.1-201ENST00000457671 1364 ntBASIC13.6□□□□□ -0.23
CLRN1P58418 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 CICP24-201ENST00000605464 2705 ntBASIC13.6□□□□□ -0.23
CLRN1P58418 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 AC007686.3-201ENST00000619017 3487 ntBASIC13.6□□□□□ -0.23
CLRN1P58418 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
CLRN1P58418 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 AC087499.6-201ENST00000411576 835 ntBASIC13.6□□□□□ -0.23
CLRN1P58418 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 SPTLC1P1-201ENST00000447199 261 ntBASIC13.6□□□□□ -0.23
CLRN1P58418 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.6□□□□□ -0.23
CLRN1P58418 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC13.6□□□□□ -0.23
CLRN1P58418 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 AC123567.1-201ENST00000548294 1261 ntBASIC13.6□□□□□ -0.23
CLRN1P58418 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.6□□□□□ -0.23
CLRN1P58418 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.6□□□□□ -0.23
CLRN1P58418 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.6□□□□□ -0.23
CLRN1P58418 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.6□□□□□ -0.23
CLRN1P58418 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.6□□□□□ -0.23
CLRN1P58418 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.6□□□□□ -0.23
CLRN1P58418 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLRN1P58418 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 CICP23-201ENST00000605013 2741 ntBASIC13.59□□□□□ -0.23
CLRN1P58418 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.59□□□□□ -0.23
CLRN1P58418 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.59□□□□□ -0.23
CLRN1P58418 FAM207CP-201ENST00000443486 507 ntBASIC13.59□□□□□ -0.23
CLRN1P58418 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.59□□□□□ -0.23
CLRN1P58418 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 AC120045.2-201ENST00000567334 178 ntBASIC13.59□□□□□ -0.23
CLRN1P58418 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 BRI3BPP1-201ENST00000594224 787 ntBASIC13.59□□□□□ -0.23
CLRN1P58418 AL096865.1-201ENST00000606796 927 ntBASIC13.59□□□□□ -0.23
CLRN1P58418 AL662799.1-202ENST00000614205 422 ntBASIC13.59□□□□□ -0.23
CLRN1P58418 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms