Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
SHMT2P34897 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
SHMT2P34897 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 AC104457.1-201ENST00000401024 814 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 GHSR-202ENST00000427970 912 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.89□□□□□ -0.03
SHMT2P34897 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.89□□□□□ -0.03
SHMT2P34897 KRT18P25-201ENST00000508931 1278 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.89□□□□□ -0.03
SHMT2P34897 AC068587.3-201ENST00000526613 355 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 AP005019.2-201ENST00000615104 511 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 RPSAP52-203ENST00000622976 1023 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 AC005840.4-201ENST00000541242 2494 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.89□□□□□ -0.03
SHMT2P34897 AC007787.1-201ENST00000588095 1583 ntBASIC14.89□□□□□ -0.03
SHMT2P34897 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHMT2P34897 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.89□□□□□ -0.03
SHMT2P34897 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.88□□□□□ -0.03
SHMT2P34897 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.88□□□□□ -0.03
SHMT2P34897 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
SHMT2P34897 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SHMT2P34897 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
SHMT2P34897 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.88□□□□□ -0.03
SHMT2P34897 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 BAATP1-201ENST00000412284 1225 ntBASIC14.88□□□□□ -0.03
SHMT2P34897 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 AC093433.1-201ENST00000458048 571 ntBASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms