Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SMARCA1P28370 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.29■□□□□ 0.36
SMARCA1P28370 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.29■□□□□ 0.36
SMARCA1P28370 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.28■□□□□ 0.36
SMARCA1P28370 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.28■□□□□ 0.36
SMARCA1P28370 AL596257.1-201ENST00000641463 2694 ntBASIC17.28■□□□□ 0.36
SMARCA1P28370 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.28■□□□□ 0.36
SMARCA1P28370 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.28■□□□□ 0.36
SMARCA1P28370 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SMARCA1P28370 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
SMARCA1P28370 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.28■□□□□ 0.36
SMARCA1P28370 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SMARCA1P28370 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.28■□□□□ 0.36
SMARCA1P28370 AC010328.2-201ENST00000597698 1111 ntBASIC17.28■□□□□ 0.36
SMARCA1P28370 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.28■□□□□ 0.36
SMARCA1P28370 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.28■□□□□ 0.36
SMARCA1P28370 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.28■□□□□ 0.36
SMARCA1P28370 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SMARCA1P28370 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SMARCA1P28370 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SMARCA1P28370 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
SMARCA1P28370 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.28■□□□□ 0.36
SMARCA1P28370 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMARCA1P28370 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SMARCA1P28370 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.28■□□□□ 0.36
SMARCA1P28370 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.27■□□□□ 0.36
SMARCA1P28370 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
SMARCA1P28370 AC020910.5-201ENST00000623668 1865 ntBASIC17.27■□□□□ 0.36
SMARCA1P28370 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
SMARCA1P28370 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.27■□□□□ 0.36
SMARCA1P28370 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.27■□□□□ 0.36
SMARCA1P28370 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMARCA1P28370 EEF1DP1-201ENST00000585891 896 ntBASIC17.27■□□□□ 0.36
SMARCA1P28370 AC002472.3-201ENST00000640124 621 ntBASIC17.27■□□□□ 0.36
SMARCA1P28370 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SMARCA1P28370 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.27■□□□□ 0.35
SMARCA1P28370 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.27■□□□□ 0.35
SMARCA1P28370 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMARCA1P28370 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SMARCA1P28370 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMARCA1P28370 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMARCA1P28370 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMARCA1P28370 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMARCA1P28370 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SMARCA1P28370 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.26■□□□□ 0.35
SMARCA1P28370 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms