Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
BDNFP23560 AL391280.1-201ENST00000506969 1062 ntBASIC15.96■□□□□ 0.15
BDNFP23560 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.96■□□□□ 0.15
BDNFP23560 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.96■□□□□ 0.15
BDNFP23560 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
BDNFP23560 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.96■□□□□ 0.15
BDNFP23560 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.96■□□□□ 0.15
BDNFP23560 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.96■□□□□ 0.15
BDNFP23560 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
BDNFP23560 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.96■□□□□ 0.15
BDNFP23560 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
BDNFP23560 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
BDNFP23560 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
BDNFP23560 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.14
BDNFP23560 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.96■□□□□ 0.14
BDNFP23560 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
BDNFP23560 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
BDNFP23560 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
BDNFP23560 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 TSPY26P-202ENST00000565928 3884 ntBASIC15.95■□□□□ 0.14
BDNFP23560 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
BDNFP23560 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.95■□□□□ 0.14
BDNFP23560 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
BDNFP23560 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.95■□□□□ 0.14
BDNFP23560 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.95■□□□□ 0.14
BDNFP23560 CNN2P10-201ENST00000443067 918 ntBASIC15.95■□□□□ 0.14
BDNFP23560 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.95■□□□□ 0.14
BDNFP23560 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
BDNFP23560 COX5BP1-201ENST00000507622 393 ntBASIC15.95■□□□□ 0.14
BDNFP23560 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.95■□□□□ 0.14
BDNFP23560 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.95■□□□□ 0.14
BDNFP23560 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.95■□□□□ 0.14
BDNFP23560 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 AC138466.3-201ENST00000619983 221 ntBASIC15.95■□□□□ 0.14
BDNFP23560 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
BDNFP23560 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.95■□□□□ 0.14
BDNFP23560 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.95■□□□□ 0.14
BDNFP23560 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
BDNFP23560 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 AC067930.6-201ENST00000623257 4947 ntBASIC15.94■□□□□ 0.14
BDNFP23560 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
BDNFP23560 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.94■□□□□ 0.14
BDNFP23560 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
BDNFP23560 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.94■□□□□ 0.14
BDNFP23560 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.94■□□□□ 0.14
BDNFP23560 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.94■□□□□ 0.14
BDNFP23560 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.94■□□□□ 0.14
BDNFP23560 ACTBP11-201ENST00000436287 1126 ntBASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms