Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.92□□□□□ -0.34
USF1P22415 GPAA1P2-201ENST00000417923 928 ntBASIC12.92□□□□□ -0.34
USF1P22415 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC12.92□□□□□ -0.34
USF1P22415 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC12.92□□□□□ -0.34
USF1P22415 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 MIR3615-201ENST00000581999 87 ntBASIC12.92□□□□□ -0.34
USF1P22415 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC12.92□□□□□ -0.34
USF1P22415 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 BX539320.1-201ENST00000623759 877 ntBASIC12.92□□□□□ -0.34
USF1P22415 AC132938.4-201ENST00000623835 848 ntBASIC12.92□□□□□ -0.34
USF1P22415 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC12.92□□□□□ -0.34
USF1P22415 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 MYO15B-237ENST00000642007 4893 ntBASIC12.92□□□□□ -0.34
USF1P22415 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.92□□□□□ -0.34
USF1P22415 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC12.91□□□□□ -0.34
USF1P22415 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 AHCYP2-201ENST00000430630 1300 ntBASIC12.91□□□□□ -0.34
USF1P22415 KRT8P35-201ENST00000483942 1338 ntBASIC12.91□□□□□ -0.34
USF1P22415 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 AP003680.1-201ENST00000598970 3660 ntBASIC12.91□□□□□ -0.34
USF1P22415 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
USF1P22415 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.91□□□□□ -0.34
USF1P22415 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.91□□□□□ -0.34
USF1P22415 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 AC006001.1-201ENST00000325130 474 ntBASIC12.91□□□□□ -0.34
USF1P22415 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 MIR1247-201ENST00000408206 136 ntBASIC12.91□□□□□ -0.34
USF1P22415 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
USF1P22415 Z93015.1-201ENST00000451718 390 ntBASIC12.91□□□□□ -0.34
USF1P22415 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC12.91□□□□□ -0.34
USF1P22415 KRT8P13-201ENST00000463294 1010 ntBASIC12.91□□□□□ -0.34
USF1P22415 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.91□□□□□ -0.34
USF1P22415 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC12.91□□□□□ -0.34
USF1P22415 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC12.91□□□□□ -0.34
USF1P22415 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC12.91□□□□□ -0.34
USF1P22415 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC12.91□□□□□ -0.34
USF1P22415 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 AL022328.3-201ENST00000607943 679 ntBASIC12.91□□□□□ -0.34
USF1P22415 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC12.91□□□□□ -0.34
USF1P22415 AC145423.3-201ENST00000615987 467 ntBASIC12.91□□□□□ -0.34
USF1P22415 AL138799.1-201ENST00000448213 1675 ntBASIC12.91□□□□□ -0.34
USF1P22415 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.91□□□□□ -0.34
USF1P22415 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
USF1P22415 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.91□□□□□ -0.34
USF1P22415 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.91□□□□□ -0.34
USF1P22415 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.91□□□□□ -0.34
USF1P22415 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
USF1P22415 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
USF1P22415 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
USF1P22415 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
USF1P22415 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
USF1P22415 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.9□□□□□ -0.34
USF1P22415 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
USF1P22415 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.9□□□□□ -0.34
USF1P22415 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
USF1P22415 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms