Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ABCA1O95477 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
ABCA1O95477 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
ABCA1O95477 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 HOMER2P2-201ENST00000451621 847 ntBASIC12.79□□□□□ -0.36
ABCA1O95477 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC12.79□□□□□ -0.36
ABCA1O95477 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 MIR4722-201ENST00000578292 60 ntBASIC12.79□□□□□ -0.36
ABCA1O95477 MIR3907-201ENST00000579424 151 ntBASIC12.79□□□□□ -0.36
ABCA1O95477 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.79□□□□□ -0.36
ABCA1O95477 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.79□□□□□ -0.36
ABCA1O95477 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
ABCA1O95477 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.79□□□□□ -0.36
ABCA1O95477 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 AC092127.1-201ENST00000567093 3455 ntBASIC12.79□□□□□ -0.36
ABCA1O95477 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC12.79□□□□□ -0.36
ABCA1O95477 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.79□□□□□ -0.36
ABCA1O95477 HNRNPA1P48-202ENST00000565308 961 ntBASIC12.79□□□□□ -0.36
ABCA1O95477 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC12.79□□□□□ -0.36
ABCA1O95477 EEF1DP1-201ENST00000585891 896 ntBASIC12.79□□□□□ -0.36
ABCA1O95477 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
ABCA1O95477 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.79□□□□□ -0.36
ABCA1O95477 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
ABCA1O95477 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC12.79□□□□□ -0.36
ABCA1O95477 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ABCA1O95477 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
ABCA1O95477 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 FAM197Y7-201ENST00000432892 766 ntBASIC12.78□□□□□ -0.36
ABCA1O95477 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 CNN2P10-201ENST00000443067 918 ntBASIC12.78□□□□□ -0.36
ABCA1O95477 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 SERPINA13P-202ENST00000478994 924 ntBASIC12.78□□□□□ -0.36
ABCA1O95477 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC12.78□□□□□ -0.36
ABCA1O95477 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC12.78□□□□□ -0.36
ABCA1O95477 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC12.78□□□□□ -0.36
ABCA1O95477 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
ABCA1O95477 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.78□□□□□ -0.36
ABCA1O95477 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
ABCA1O95477 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 KRT8P35-201ENST00000483942 1338 ntBASIC12.78□□□□□ -0.36
ABCA1O95477 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
ABCA1O95477 SDHD-202ENST00000525291 790 ntTSL 3 BASIC12.78□□□□□ -0.36
ABCA1O95477 RERG-205ENST00000537647 935 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA1O95477 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA1O95477 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
ABCA1O95477 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms