Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 METTL7AP1-201ENST00000547343 496 ntBASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 AL139317.2-201ENST00000556998 158 ntBASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 URAHP-205ENST00000610227 398 ntBASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 AC048382.6-201ENST00000621980 1223 ntBASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 ABALON-201ENST00000629058 1903 ntBASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL25A1Q9BXS0 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 PPP1R2P10-201ENST00000393023 595 ntBASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 SPTLC1P3-201ENST00000403408 259 ntBASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 WDR54-202ENST00000409791 854 ntTSL 3 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 PSAT1P2-201ENST00000426107 972 ntBASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 AL021707.6-201ENST00000609212 491 ntBASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 AC134878.2-201ENST00000620700 1265 ntBASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 AC002511.3-201ENST00000638098 420 ntBASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL25A1Q9BXS0 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.88□□□□□ -0.03
COL25A1Q9BXS0 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms