Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 STOM-202ENST00000347359 870 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AL627223.1-201ENST00000416693 442 ntBASIC13.34□□□□□ -0.27
NKX3-1Q99801 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 MIR4453-201ENST00000584019 89 ntBASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC093028.1-201ENST00000622998 982 ntBASIC13.34□□□□□ -0.27
NKX3-1Q99801 AL513210.1-201ENST00000629608 234 ntBASIC13.34□□□□□ -0.27
NKX3-1Q99801 AF228730.6-201ENST00000641497 218 ntBASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC084121.3-201ENST00000641716 218 ntBASIC13.34□□□□□ -0.27
NKX3-1Q99801 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
NKX3-1Q99801 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.33□□□□□ -0.27
NKX3-1Q99801 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
NKX3-1Q99801 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.33□□□□□ -0.27
NKX3-1Q99801 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.33□□□□□ -0.28
NKX3-1Q99801 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 AC026150.2-201ENST00000564693 1156 ntBASIC13.33□□□□□ -0.28
NKX3-1Q99801 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 RAB34-224ENST00000636513 888 ntTSL 5 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
NKX3-1Q99801 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX3-1Q99801 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.32□□□□□ -0.28
NKX3-1Q99801 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms